View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_high_22 (Length: 253)
Name: NF15565_high_22
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_high_22 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 107 - 253
Target Start/End: Original strand, 31795697 - 31795843
Alignment:
| Q |
107 |
acactttgtataatcttgattgtatcaacacatccttgaattgaaaatacaaaagccaaaattgattcttccatccattttctccagcccaaacttcaca |
206 |
Q |
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| T |
31795697 |
acaccttgtgtaatcttgattgtatcaacacatccttgagttgaaaatacaaaagccaaaattgattcttccatccattttctccaacccaaacttcaca |
31795796 |
T |
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| Q |
207 |
gcggagcttatgattgcaacactttcacaataccacccttctttttt |
253 |
Q |
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| T |
31795797 |
gcggagcttatgattgcaacactttcacaataccacccttctttttt |
31795843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 31795562 - 31795666
Alignment:
| Q |
13 |
aagaatattcgtatgtcgaaaattaggcgaaaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactt |
112 |
Q |
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| T |
31795562 |
aagaatattcgtatgtcgaaaatcagacgaaaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactt |
31795661 |
T |
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| Q |
113 |
tgtat |
117 |
Q |
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||||| |
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| T |
31795662 |
tgtat |
31795666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 22189810 - 22189869
Alignment:
| Q |
55 |
gcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactttg |
114 |
Q |
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| T |
22189810 |
gcaacttccatgttgacaggaagctcttcaaccatcaacataatatcataacacactttg |
22189869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 24307478 - 24307393
Alignment:
| Q |
163 |
caaaattgattcttccatccattttctccagcccaaacttcacagcggagcttatgattgcaacactttcacaataccacccttct |
248 |
Q |
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| T |
24307478 |
caaaattgatttttccatcaattttctcaagcccaaactttttagcggaacttttgactgcaacactttcatagtaccacccttct |
24307393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 1604845 - 1604975
Alignment:
| Q |
113 |
tgtataatcttgattgtatcaacacatccttgaattgaaa-atacaaaagccaaaattgattcttccatccattttctccagcccaaacttcacagcgga |
211 |
Q |
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| T |
1604845 |
tgtataatcttgattgtattaacccgtccttgacttgaaatttccacaagtcaaaattcattcttccttcaattttctatagcccaaacttcatagcgaa |
1604944 |
T |
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| Q |
212 |
gcttatgattgcaacactttcacaataccac |
242 |
Q |
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| T |
1604945 |
agtagtaattgcaacactttcatagtaccac |
1604975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 4034177 - 4034238
Alignment:
| Q |
43 |
aaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcaca |
104 |
Q |
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| T |
4034177 |
aaaacttatggtgcagcttccatgttggtagaaagttcttcaaccaccgatataatctcaca |
4034238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 52733453 - 52733358
Alignment:
| Q |
156 |
caaaagccaaaattgattcttccatccattttctcca-gcccaaacttcacagcggagcttatgattgcaacactttcacaataccacccttcttt |
250 |
Q |
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| T |
52733453 |
caaaaggcaaaattgatgcttccatcaattttctctaagcctaaacttcacggtagaacttatgattgcaacacttttataataccacacttcttt |
52733358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 4529275 - 4529149
Alignment:
| Q |
112 |
ttgtataatcttgattgtatcaacacatccttgaattgaaaat---acaaaagccaaaattgattcttccatccattttctccagcccaaacttcacagc |
208 |
Q |
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| T |
4529275 |
ttgtataatcgtgattggatcgaaacatccatgacttgaaaactccacacaaggcaaaattgattcttccaccaattttctctagcccaaatttcaatac |
4529176 |
T |
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| Q |
209 |
ggagcttatgattgcaacactttcaca |
235 |
Q |
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| T |
4529175 |
aaaacttgtgattgcaacactttcaca |
4529149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 10149959 - 10149858
Alignment:
| Q |
13 |
aagaatattcgtatgtcgaaaattaggcgaaaaacttttggtgcaacttgcatgttgacaagaagctcttcaaccaccgatataatctcacaacacactt |
112 |
Q |
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| T |
10149959 |
aagaattttcatgtgtcgaaaatcaggtgaaaaacttatggtacaacttttatgtgggccggaagttcttcaaccaccgacataatctcataacacaatt |
10149860 |
T |
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| Q |
113 |
tg |
114 |
Q |
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|| |
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| T |
10149859 |
tg |
10149858 |
T |
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