View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_high_24 (Length: 250)
Name: NF15565_high_24
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 54265984 - 54266185
Alignment:
| Q |
40 |
cacaagatatgttaagattaatccaaagcatgtagagcagaacacactacactgacacaagttatatgtaaaattaacaataaacacatctatacctcac |
139 |
Q |
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| T |
54265984 |
cacaagatatgttaagattaatccaaagcatgtagagcagaacacactacactgacgcaagttatatgtaaaattaacaataaacacatatatacctcac |
54266083 |
T |
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| Q |
140 |
attttaaaaacaaaaatgattgttttactcatttatgtaatatacttacaattagtagcaatatatagtatatacttgtaaaaaagaaagcatgagtatt |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
54266084 |
attttaaaaacaaaaatgattgttttactcatttatgtaatatacttactattagtagcaatatatattatatacttgtaaaaaagaaagcatgaatatt |
54266183 |
T |
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| Q |
240 |
at |
241 |
Q |
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|| |
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| T |
54266184 |
at |
54266185 |
T |
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