View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_1 (Length: 751)
Name: NF15565_low_1
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 16 - 744
Target Start/End: Complemental strand, 18584975 - 18584251
Alignment:
| Q |
16 |
agaataataggaatttaattttaagttgaatttatcaaagaaataagagatattaannnnnnnnnaaaattaatcaggttagttaaatataggtaattga |
115 |
Q |
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| T |
18584975 |
agaataataggaatttaatttgaagttgaatttatcaaagaaataagagatattaatttttttttaaaattaatcaggttagttaaatataggtaattga |
18584876 |
T |
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| Q |
116 |
agcttaccagccaacccaattttctgtccacatcttggggctgtttgggttattgggttcaaagtcgtgacaataccatccattgcaagtattaatc-tg |
214 |
Q |
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| T |
18584875 |
agcttaccagccaacccaattttctgtccacatcttggggctgtttgggttattgggttcaaagtcgtgacaataccatccattgcaagtattaatcttg |
18584776 |
T |
|
| Q |
215 |
cat--acaaattcaattaagaaaatattgttagttttca--atagtgagaaaagaaaacaatcaaatactaatagttcttaaatactttcattttcttga |
310 |
Q |
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| T |
18584775 |
catagaaaaatttaattaagaaaatattgttagttttcaatatagtgagaaaagaaaacaatcaaatactaatagttcttatatacttttattttcttga |
18584676 |
T |
|
| Q |
311 |
aaagatagttagtttatggttaaatcatttttgtttttattctaacccctcttgaaaaagaaataacagtactataatttaacttaattgttatttgata |
410 |
Q |
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| T |
18584675 |
aaagataattagtttatgtttaaatcatatttgtttttattctaacacctcttgaaaatgaaat-acaatagtatcat-----ttaattgttacttgata |
18584582 |
T |
|
| Q |
411 |
taaataaaatttataataaactaaatttacatagaaaaaacannnnnnnnnnnaaacttagacaaatataaagctgaaacttaccattggttgaggagca |
510 |
Q |
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| T |
18584581 |
taaataaaatttataataaactaaatttacatagaaaaaaca-tattttttttaaacttagacaaatataaagcagaaacttaccattggttgaggagca |
18584483 |
T |
|
| Q |
511 |
tcaggttgttggcacatgatccatgggactccaatgttgaatgcctcagccatgtttgcacaccaatttatataagctttgccttcatccccataagctg |
610 |
Q |
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| T |
18584482 |
tcaggttgttggcacatgatccatgggactccaatgttgaatgaatcagccatattggcacaccaatttatataagctttaccttcatccccataagctg |
18584383 |
T |
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| Q |
611 |
acataacattcccatattcattctcaatctgtttaatatgaatcattaatcatcaattaggtatattaatacacaaagtgaagattttttaattaaataa |
710 |
Q |
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| T |
18584382 |
acataacattcccatattcattctcaatctgtttaatatgaatcattaatcatcaatta-gtatattaatacacaaaatgaagattttttaattaaataa |
18584284 |
T |
|
| Q |
711 |
tttttaataaacgaattacctgagatagaattat |
744 |
Q |
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| T |
18584283 |
-ttttaataaacaaattacctgagatagaattat |
18584251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 499 - 548
Target Start/End: Complemental strand, 9643003 - 9642954
Alignment:
| Q |
499 |
ggttgaggagcatcaggttgttggcacatgatccatgggactccaatgtt |
548 |
Q |
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| T |
9643003 |
ggttgaggagcatcttgttgttgacacatgatccatggaacaccaatgtt |
9642954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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