View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_10 (Length: 361)
Name: NF15565_low_10
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 33826636 - 33826309
Alignment:
| Q |
1 |
attcactaattatatcaaacaagcgtcacaagtgcttataccagtagtaaaacttaaacgagcttagttaatatgctctgtcagtggatgcatgtgtaaa |
100 |
Q |
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| T |
33826636 |
attcactaattatatcaaacaagcgtcgcaagtgcttataccagtagtaaaacttaaacgagcttagttaatatgctctgtcagtggatgcatgtgtaaa |
33826537 |
T |
|
| Q |
101 |
gtaatta--cactgacagagtatattaattaaattcaacttaaattagtcaatccaaacagaccctaataccttatcagtgtttgagctggaaccagttt |
198 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33826536 |
gtaattatacactgacagagtatattaattaaattcaacttaaattagtcaatccaaacagaccctaataccttatcagtgtttgagctggaaccagttt |
33826437 |
T |
|
| Q |
199 |
ttcccttttgtcctgagaatgatgcaaacaaatcacatcacataagcataagcacatgaacattcaaatgttaaaatcttaacataaatcaaaatattat |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33826436 |
ttcccttttgtcctgagaatgatgcaaacaaatcacatcacataagcataaacacatgaacattcaaatgttaaaatcttaacataaatcaaaatattat |
33826337 |
T |
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| Q |
299 |
tataataatataatgataagaatgtgac |
326 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
33826336 |
tataataatataatgataagaatgtgac |
33826309 |
T |
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