View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15565_low_13 (Length: 346)

Name: NF15565_low_13
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15565_low_13
NF15565_low_13
[»] chr8 (8 HSPs)
chr8 (13-346)||(10923620-10923949)
chr8 (229-343)||(9700028-9700142)
chr8 (230-342)||(6950350-6950462)
chr8 (230-292)||(20186394-20186456)
chr8 (230-292)||(20205461-20205523)
chr8 (231-294)||(33940094-33940161)
chr8 (230-268)||(35565370-35565408)
chr8 (231-295)||(30191072-30191136)
[»] chr5 (4 HSPs)
chr5 (230-339)||(11297126-11297235)
chr5 (230-288)||(1084069-1084127)
chr5 (273-346)||(37526172-37526245)
chr5 (273-345)||(37690609-37690681)
[»] scaffold0459 (1 HSPs)
scaffold0459 (230-343)||(6573-6686)
[»] scaffold0366 (1 HSPs)
scaffold0366 (230-343)||(6571-6684)
[»] chr4 (5 HSPs)
chr4 (230-343)||(33534099-33534212)
chr4 (217-345)||(2996598-2996726)
chr4 (230-296)||(50746049-50746115)
chr4 (230-295)||(6428093-6428158)
chr4 (230-343)||(53315353-53315466)
[»] chr7 (6 HSPs)
chr7 (242-345)||(22387838-22387941)
chr7 (13-75)||(29998882-29998944)
chr7 (231-294)||(8094382-8094445)
chr7 (231-341)||(752998-753108)
chr7 (230-292)||(44289973-44290035)
chr7 (231-339)||(44808189-44808297)
[»] chr3 (6 HSPs)
chr3 (259-346)||(14548680-14548767)
chr3 (230-305)||(29600665-29600740)
chr3 (254-338)||(47132026-47132110)
chr3 (259-295)||(2175808-2175844)
chr3 (298-342)||(32064467-32064511)
chr3 (230-270)||(45541671-45541711)
[»] chr1 (8 HSPs)
chr1 (231-345)||(31517671-31517785)
chr1 (230-271)||(2522695-2522736)
chr1 (230-345)||(30259416-30259531)
chr1 (230-291)||(7707269-7707330)
chr1 (301-342)||(20713684-20713725)
chr1 (232-340)||(4868430-4868537)
chr1 (230-346)||(10439710-10439826)
chr1 (279-343)||(11639395-11639459)
[»] chr2 (3 HSPs)
chr2 (230-336)||(43456637-43456743)
chr2 (273-334)||(1494419-1494480)
chr2 (236-292)||(43808636-43808692)
[»] chr6 (1 HSPs)
chr6 (230-295)||(30863321-30863386)


Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 10923949 - 10923620
Alignment:
Q  13 cagacatatgggcatggaggaaatatggtcaaaaaccactcaaagggtcaccatctcaaaggtcagtttttaaaaatgtaatcctttttatggtcaataa 112  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| ||||||||||| ||||| | ||    
T  10923949 cagacatatgggcatggaggaaatatggtcaaaaaccaatcaaagggtcaccatatccaaggtcagtttttaaaaatttaatcctttttttggtccaaaa 10923850  T
Q  113 aatatttaaccaatttaaagaaaaatgannnnnnnnagacttattaattagtattacctatttaaagaaaaatgannnnnnnacacttattagtattaca 212  Q
    |||||||||| |||||||||||||||||        ||||||||||    ||||||||||||||||||||||||        ||||||||||||||||||    
T  10923849 aatatttaacaaatttaaagaaaaatgattttttttagacttatta----gtattacctatttaaagaaaaatgttttttttacacttattagtattaca 10923754  T
Q  213 tatacctatttatatcaacttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaata 312  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10923753 tatacctatttatatcgacttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaata 10923654  T
Q  313 aactgtttttatcttattttcataagctctccag 346  Q
    ||||||||||||||||||||||||||||||||||    
T  10923653 aactgtttttatcttattttcataagctctccag 10923620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 343
Target Start/End: Complemental strand, 9700142 - 9700028
Alignment:
Q  229 aacttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatctta 328  Q
    |||||||||||| |||| || | |||||||||||||| |||| ||||||||||| || ||||| |||| || ||||| || |||| ||||||| | ||||    
T  9700142 aacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgtccataagctgttttcacctta 9700043  T
Q  329 ttttcataagctctc 343  Q
    |||||||||||||||    
T  9700042 ttttcataagctctc 9700028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 342
Target Start/End: Complemental strand, 6950462 - 6950350
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttat 329  Q
    |||||||||||||||| || ||||||||||| |||| |||   |||| ||||| ||||| ||||||  || ||||| || ||||  |||||| | |||||    
T  6950462 acttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgacatgtcgataagttgttttcagcttat 6950363  T
Q  330 tttcataagctct 342  Q
    || ||||||||||    
T  6950362 ttccataagctct 6950350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 20186394 - 20186456
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaa 292  Q
    ||||||||||| |||| |||||||||| ||||| || |||| |||  ||||||||||||||||    
T  20186394 acttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 20186456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 20205461 - 20205523
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaa 292  Q
    ||||||||||| |||| |||||||||| ||||| || |||| |||  ||||||||||||||||    
T  20205461 acttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 20205523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 33940161 - 33940094
Alignment:
Q  231 cttatttgagtttatttagtggcataaa----cacttgtaagacaatttgagagagtttatgaaaaca 294  Q
    |||||||||| ||| ||| |||||||||    ||||||| |||||||||||||||| |||||||||||    
T  33940161 cttatttgagcttacttattggcataaataagcacttgtgagacaatttgagagagcttatgaaaaca 33940094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 35565408 - 35565370
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaag 268  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  35565408 acttatttgagtttgtttagtggcaaaaacacttgtaag 35565370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 30191072 - 30191136
Alignment:
Q  231 cttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaa 295  Q
    ||||||||||||||| || |||||||| ||||||| ||||  |||| ||||| ||||| ||||||    
T  30191072 cttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaa 30191136  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 339
Target Start/End: Original strand, 11297126 - 11297235
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttat 329  Q
    |||||||| || |||| ||||||||||||||||||||||||  ||||| |||| ||||| ||||||  |||||||| ||||| | || |||| | |||||    
T  11297126 acttatttaagcttatctagtggcataaacacttgtaagactgtttgaaagagcttatggaaacaacttaagacatgtcaattagctattttcagcttat 11297225  T
Q  330 tttcataagc 339  Q
    ||||||||||    
T  11297226 tttcataagc 11297235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Original strand, 1084069 - 1084127
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatg 288  Q
    ||||||||||||||||||| || ||||| ||||||| | ||  ||||||||||||||||    
T  1084069 acttatttgagtttatttactgacataagcacttgtgaaactgtttgagagagtttatg 1084127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 37526172 - 37526245
Alignment:
Q  273 tttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttattttcataagctctccag 346  Q
    |||||||||| ||||||| ||||  || ||||| | ||||| ||||||| | ||||||| ||||||||||||||    
T  37526172 tttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctccag 37526245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 37690609 - 37690681
Alignment:
Q  273 tttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttattttcataagctctcca 345  Q
    |||||||||| ||||||| ||||  || ||||| | ||||| ||||||| | ||||||| |||||||||||||    
T  37690609 tttgagagagcttatgaatacaacctatgacatgttaataagctgttttcagcttatttccataagctctcca 37690681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 6686 - 6573
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttat 329  Q
    ||||||||||| |||| || ||| |||| ||||||| ||||| |||||||||| ||||||||||||  || ||||||  ||||| |||||||   ||||     
T  6686 acttatttgagcttatatattggtataatcacttgtgagacagtttgagagagattatgaaaacaagttatgacatacaaataagctgttttctgcttac 6587  T
Q  330 tttcataagctctc 343  Q
    ||||||||||||||    
T  6586 tttcataagctctc 6573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 6684 - 6571
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttat 329  Q
    ||||||||||| |||| || ||| |||| ||||||| ||||| |||||||||| ||||||||||||  || ||||||  ||||| |||||||   ||||     
T  6684 acttatttgagcttatatattggtataatcacttgtgagacagtttgagagagattatgaaaacaagttatgacatacaaataagctgttttctgcttac 6585  T
Q  330 tttcataagctctc 343  Q
    ||||||||||||||    
T  6584 tttcataagctctc 6571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 343
Target Start/End: Original strand, 33534099 - 33534212
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttat 329  Q
    ||||||||||| |||| ||||| |||||  |||||| |||  ||||||||||| ||||||||||||  |  |||||||| ||||  |||||| | |||||    
T  33534099 acttatttgagcttatctagtgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacatatccataagttgttttcagcttat 33534198  T
Q  330 tttcataagctctc 343  Q
    ||||||||||||||    
T  33534199 tttcataagctctc 33534212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 345
Target Start/End: Complemental strand, 2996726 - 2996598
Alignment:
Q  217 cctatttatatcaacttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaact 316  Q
    |||||||| || | |||||||||  ||||||| || ||||| ||||| | ||||  |||||||||| ||||||||||||  || ||||| || |||| ||    
T  2996726 cctatttagattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagct 2996627  T
Q  317 gtttttatcttattttcataagctctcca 345  Q
     |||| | |||||||||||| ||||||||    
T  2996626 tttttcaacttattttcatacgctctcca 2996598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 50746115 - 50746049
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaat 296  Q
    |||||||||||||||| || | |||||| ||||||| |||| ||||| | |||||||||||||||||    
T  50746115 acttatttgagtttatctacttgcataagcacttgtgagactatttgtgtgagtttatgaaaacaat 50746049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 6428158 - 6428093
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaa 295  Q
    ||||||||||| |||| || ||| |||| ||||||| ||||| |||||||||| ||||||||||||    
T  6428158 acttatttgagcttatatattggtataagcacttgtgagacagtttgagagagattatgaaaacaa 6428093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 343
Target Start/End: Complemental strand, 53315466 - 53315353
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttat 329  Q
    ||||||||||| ||||  | ||| |||| ||| | |||||| ||||| ||||| ||||||||||||  ||  |||| || |||| || |||||| |||||    
T  53315466 acttatttgagcttatccactggtataagcacatataagactatttgtgagagcttatgaaaacaacatatcacatgtccataagctatttttaacttat 53315367  T
Q  330 tttcataagctctc 343  Q
    ||||||||||||||    
T  53315366 tttcataagctctc 53315353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 22387838 - 22387941
Alignment:
Q  242 ttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttattttcataagctc 341  Q
    ||||||| || ||||||||| ||| ||||  |||| ||||| ||||||||||||  || | ||| |  |||||||||||||| ||||||| |||||||||    
T  22387838 ttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtttataaactgtttttaacttatttccataagctc 22387937  T
Q  342 tcca 345  Q
    ||||    
T  22387938 tcca 22387941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 29998882 - 29998944
Alignment:
Q  13 cagacatatgggcatggaggaaatatggtcaaaaaccactcaaagggtcaccatctcaaaggt 75  Q
    |||| ||||||||||||||||||||||| ||||||||  | ||||||||||||| || |||||    
T  29998882 cagatatatgggcatggaggaaatatggacaaaaacctataaaagggtcaccatatccaaggt 29998944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 8094445 - 8094382
Alignment:
Q  231 cttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaaca 294  Q
    |||||||||| |||| || | |||||| ||||||| |||| |||||||||| ||||||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaaca 8094382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 341
Target Start/End: Complemental strand, 753108 - 752998
Alignment:
Q  231 cttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttatt 330  Q
    |||||||||| |||| || | |||||| ||| | ||||||   |||| |||  ||||||||||| | || ||||||||||||| ||||||||| || |||    
T  753108 cttatttgagcttatctacttgcataagcacctctaagactgattgaaagaacttatgaaaacagtttatgacatatcaataagctgtttttagctaatt 753009  T
Q  331 ttcataagctc 341  Q
    |||||| ||||    
T  753008 ttcatatgctc 752998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 292
Target Start/End: Original strand, 44289973 - 44290035
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaa 292  Q
    ||||||||||| |||| |||||||||| ||||| || |||| |||  ||||||||||||||||    
T  44289973 acttatttgagcttatctagtggcatagacactggtgagactattcaagagagtttatgaaaa 44290035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 339
Target Start/End: Complemental strand, 44808297 - 44808189
Alignment:
Q  231 cttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttatt 330  Q
    |||||||||| ||||||| | |||||| || |||| ||||  ||||| |||  ||||||||| ||  || ||||| || |||| ||||||| | ||||||    
T  44808297 cttatttgagcttatttattagcataagcagttgtcagactgtttgatagaccttatgaaaataacttatgacatgtccataacctgttttcagcttatt 44808198  T
Q  331 ttcataagc 339  Q
    |||||||||    
T  44808197 ttcataagc 44808189  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 346
Target Start/End: Original strand, 14548680 - 14548767
Alignment:
Q  259 cacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttattttcataagctctccag 346  Q
    ||||||| ||||  |||||||||| |||||||||||| ||| ||||| | ||||  ||||||| | ||||||| ||||||||||||||    
T  14548680 cacttgtgagactgtttgagagagcttatgaaaacaacgtatgacattttaataggctgttttcagcttatttccataagctctccag 14548767  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 29600665 - 29600740
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacat 305  Q
    ||||||||||||||||||| |||||| |||| || | |||   |||||||||||||||||||||||| || |||||    
T  29600665 acttatttgagtttatttactggcatgaacagttattagattgtttgagagagtttatgaaaacaatttatgacat 29600740  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 338
Target Start/End: Complemental strand, 47132110 - 47132026
Alignment:
Q  254 ataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttattttcataag 338  Q
    |||| ||| |||||||| ||||||||||  ||||||||||||  || | |||||| |||||||||||| | |||||||| |||||    
T  47132110 ataaccacatgtaagactatttgagagaacttatgaaaacaacttatgtcatatccataaactgttttcagcttatttttataag 47132026  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 295
Target Start/End: Original strand, 2175808 - 2175844
Alignment:
Q  259 cacttgtaagacaatttgagagagtttatgaaaacaa 295  Q
    |||||||||||| |||||||| |||||||||||||||    
T  2175808 cacttgtaagactatttgagatagtttatgaaaacaa 2175844  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 32064511 - 32064467
Alignment:
Q  298 taagacatatcaataaactgtttttatcttattttcataagctct 342  Q
    ||||| ||||| |||||||||||| | ||||||||||||||||||    
T  32064511 taagatatatccataaactgttttcaacttattttcataagctct 32064467  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 45541711 - 45541671
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagac 270  Q
    ||||||||||| ||||||| ||| |||||||||||||||||    
T  45541711 acttatttgagcttatttaatggtataaacacttgtaagac 45541671  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 345
Target Start/End: Original strand, 31517671 - 31517785
Alignment:
Q  231 cttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttatt 330  Q
    |||||||||| ||||||| |||||||| ||||||| ||||  |||| ||||  |||| |||||||   | ||||| |  |||| ||||||| | ||||||    
T  31517671 cttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcagcttatt 31517770  T
Q  331 ttcataagctctcca 345  Q
    |||||||||||||||    
T  31517771 ttcataagctctcca 31517785  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 2522736 - 2522695
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagaca 271  Q
    |||||||||||||||| || ||||||||||||||||||||||    
T  2522736 acttatttgagtttatctactggcataaacacttgtaagaca 2522695  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 345
Target Start/End: Original strand, 30259416 - 30259531
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttat 329  Q
    |||||||||||||||  ||  ||||||||||| | |||| |  ||||| |||| ||||  ||||||  || ||||| |||||||| |||||| | |||||    
T  30259416 acttatttgagtttacctaccggcataaacacatttaaggctgtttgaaagagcttatagaaacaacttacgacatgtcaataaattgttttcaacttat 30259515  T
Q  330 tttcataagctctcca 345  Q
    || |||||||||||||    
T  30259516 ttccataagctctcca 30259531  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 7707330 - 7707269
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaa 291  Q
    |||||||||| ||||| || | | ||||| ||||||||||  ||||||||||||||||||||    
T  7707330 acttatttgaatttatctactagtataaatacttgtaagattatttgagagagtttatgaaa 7707269  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 20713725 - 20713684
Alignment:
Q  301 gacatatcaataaactgtttttatcttattttcataagctct 342  Q
    ||||| || |||| ||||||||||||||||||||||||||||    
T  20713725 gacatgtccataagctgtttttatcttattttcataagctct 20713684  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 340
Target Start/End: Complemental strand, 4868537 - 4868430
Alignment:
Q  232 ttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttattt 331  Q
    |||||||| ||||| || || ||||  ||||||| ||||  |||||||||||||||| ||||||  || ||||| |||||||  |||||| | |||||||    
T  4868537 ttatttgaatttatctattgacataggcacttgtgagactgtttgagagagtttatg-aaacaacttatgacatgtcaataagttgttttcaacttattt 4868439  T
Q  332 tcataagct 340  Q
     ||||||||    
T  4868438 acataagct 4868430  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 346
Target Start/End: Complemental strand, 10439826 - 10439710
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttat 329  Q
    ||||||||||| |||||||  | |||||   ||||| |||| ||||| ||||| ||||||||||||  || ||||| || |||| ||| ||| | |||||    
T  10439826 acttatttgagcttatttatggccataagatcttgtgagactatttgggagagcttatgaaaacaaactatgacatgtccataatctgctttcagcttat 10439727  T
Q  330 tttcataagctctccag 346  Q
    || ||||| ||||||||    
T  10439726 ttccataaactctccag 10439710  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 11639395 - 11639459
Alignment:
Q  279 agagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttattttcataagctctc 343  Q
    |||| |||||||||||   || ||||| || |||| ||||||||| |||||||||||||||||||    
T  11639395 agagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctc 11639459  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 43456637 - 43456743
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttat 329  Q
    ||||||||||  ||||||| |  ||||||||||||||||||  ||||| |||| || |||||||||   | ||||| || |||||||||||| | |||||    
T  43456637 acttatttgaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgttttcagcttat 43456736  T
Q  330 tttcata 336  Q
    || ||||    
T  43456737 ttccata 43456743  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 1494419 - 1494480
Alignment:
Q  273 tttgagagagtttatgaaaacaatgtaagacatatcaataaactgtttttatcttattttca 334  Q
    |||||||||| |||||||||||   || ||||| || |||||||||||||| ||||||||||    
T  1494419 tttgagagagcttatgaaaacagcttatgacatgtccataaactgtttttagcttattttca 1494480  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 43808692 - 43808636
Alignment:
Q  236 ttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaa 292  Q
    |||| |||||| | || |||||| ||||||||||| ||||||||||| |||||||||    
T  43808692 ttgactttattcactgacataaatacttgtaagactatttgagagagcttatgaaaa 43808636  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 30863386 - 30863321
Alignment:
Q  230 acttatttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaacaa 295  Q
    |||||||||||  |||||| |||||||||||||||| ||||  ||||  |||| ||||||||||||    
T  30863386 acttatttgagcctatttattggcataaacacttgttagactctttggtagagcttatgaaaacaa 30863321  T

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