View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15565_low_15 (Length: 324)

Name: NF15565_low_15
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15565_low_15
NF15565_low_15
[»] chr6 (4 HSPs)
chr6 (187-313)||(34352680-34352804)
chr6 (18-104)||(34353323-34353409)
chr6 (128-187)||(33629625-33629684)
chr6 (131-187)||(1682567-1682623)
[»] chr4 (4 HSPs)
chr4 (128-187)||(3130533-3130592)
chr4 (128-184)||(47540455-47540511)
chr4 (128-177)||(5817735-5817784)
chr4 (128-177)||(8655627-8655676)
[»] chr3 (3 HSPs)
chr3 (128-187)||(32004507-32004566)
chr3 (129-187)||(13448006-13448064)
chr3 (128-187)||(49732487-49732546)
[»] chr8 (1 HSPs)
chr8 (128-187)||(19385264-19385323)
[»] chr1 (7 HSPs)
chr1 (128-177)||(14366178-14366227)
chr1 (128-177)||(21527698-21527747)
chr1 (128-187)||(4644539-4644599)
chr1 (129-177)||(48266273-48266321)
chr1 (128-187)||(52336189-52336248)
chr1 (128-177)||(9528307-9528356)
chr1 (131-187)||(47115814-47115871)
[»] chr7 (1 HSPs)
chr7 (128-177)||(9546274-9546323)
[»] chr5 (1 HSPs)
chr5 (128-174)||(10487460-10487506)
[»] scaffold0220 (1 HSPs)
scaffold0220 (128-177)||(22767-22816)


Alignment Details
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 187 - 313
Target Start/End: Complemental strand, 34352804 - 34352680
Alignment:
Q  187 ccgatatgtttgtgtcctcgaaagatacgttcagaaaaattgagagattcctaaacaaacatgagcggtttatagagcaatttccacaaattatctatac 286  Q
    |||||| |||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352804 ccgataggtttgtgtcctcaaaagatacgttcagaaaaattgaga--ttcctaaacaaacatgagcggtttatagagcaatttccacaaattatctatac 34352707  T
Q  287 tatatatacaaaaaataacatacttca 313  Q
    ||| || | | ||||||||||||||||    
T  34352706 tatgtacaaagaaaataacatacttca 34352680  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 34353409 - 34353323
Alignment:
Q  18 acatttatttcctcattttgggttgcatgtttggcaatacaatgggtcatttggtgacccacctatatggaatgacaaaaatcaact 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34353409 acatttatttcctcattttgggttgcatgtttggcaatacaatgggtcatttggtgacccacctatatggaatgacaaaaatcaact 34353323  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 33629684 - 33629625
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctgctgtagtctc 187  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||    
T  33629684 ctgatgtagctctgttgggttggttgttttgttgtaactcttggttcttgttgtagtctc 33629625  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 1682623 - 1682567
Alignment:
Q  131 atgtagctctgttggattggttgttttgttgtaactcttggttcctgctgtagtctc 187  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||    
T  1682623 atgtagctctgttggattggttgttttgttgtaactcttggttcttgtagtagtctc 1682567  T

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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 3130533 - 3130592
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctgctgtagtctc 187  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  3130533 ctgatgtagctctgttgggttggttgttttgttgtaactcttggttcctgttgtagtctc 3130592  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 47540511 - 47540455
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctgctgtagt 184  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  47540511 ctgatgtaactctgttgggttggttgttttgttgtaactcttggttcctgttgtagt 47540455  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 5817735 - 5817784
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctg 177  Q
    |||||||||||||||||| ||| |||||||||| ||| ||||||||||||    
T  5817735 ctgatgtagctctgttgggttgtttgttttgttttaattcttggttcctg 5817784  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 8655627 - 8655676
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctg 177  Q
    ||||||||| | |||||| ||| |||||||||||||||||||||||||||    
T  8655627 ctgatgtagttatgttgggttgtttgttttgttgtaactcttggttcctg 8655676  T

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Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 32004566 - 32004507
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctgctgtagtctc 187  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  32004566 ctgatgtagctctgttgggttggttgttttgttgtaactcttggttcctgttgtagtctc 32004507  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 13448064 - 13448006
Alignment:
Q  129 tgatgtagctctgttggattggttgttttgttgtaactcttggttcctgctgtagtctc 187  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  13448064 tgatgtagctctgttgggttggttgttttattgtaactcttggttcctgctgtagtctc 13448006  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 49732487 - 49732546
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctgctgtagtctc 187  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||    
T  49732487 ctgatgtagctctgttgggttggttgttttgttgtaactcttgattcctgttgtagtctc 49732546  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 19385264 - 19385323
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctgctgtagtctc 187  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  19385264 ctgatgtagctctgttgggttggttgttttgttgtaactcttggttcctattgtagtctc 19385323  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 14366178 - 14366227
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctg 177  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14366178 ctgatgtagctctgttgggttggttgttttgttgtaactcttggttcctg 14366227  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 21527747 - 21527698
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctg 177  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  21527747 ctgatgtagctctgttgggttgtttgttttgttgtaactcttggttcctg 21527698  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 4644599 - 4644539
Alignment:
Q  128 ctgatgtagctctgttggattggttgtttt-gttgtaactcttggttcctgctgtagtctc 187  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||    
T  4644599 ctgatgtagctctgttgggttggttgtttttgttgtaactcttggttcttgttgtagtctc 4644539  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 48266273 - 48266321
Alignment:
Q  129 tgatgtagctctgttggattggttgttttgttgtaactcttggttcctg 177  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  48266273 tgatgtagctctgttgtgttggttgttttgttgtaactcttggttcctg 48266321  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 52336248 - 52336189
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctgctgtagtctc 187  Q
    |||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||| ||||    
T  52336248 ctgatgtagctctgttgggttggttgttttgttgcaactcttggctcctgttgtaatctc 52336189  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 9528307 - 9528356
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctg 177  Q
    |||||||| ||||||||| ||| |||||||| ||||||||||||||||||    
T  9528307 ctgatgtaactctgttgggttgtttgttttggtgtaactcttggttcctg 9528356  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 47115871 - 47115814
Alignment:
Q  131 atgtagctctgttggattggttgt-tttgttgtaactcttggttcctgctgtagtctc 187  Q
    |||||||| |||||| |||||||| ||||||||||||||||||| ||| |||||||||    
T  47115871 atgtagctttgttgggttggttgtatttgttgtaactcttggtttctgttgtagtctc 47115814  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 9546323 - 9546274
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctg 177  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  9546323 ctgatgtagctctgttgggttgtttgttttgttgtaactcttggttcctg 9546274  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 10487460 - 10487506
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttc 174  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  10487460 ctgatgtagctctgttgggttgtttgttttgttgtaactcttggttc 10487506  T

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Target: scaffold0220 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 22767 - 22816
Alignment:
Q  128 ctgatgtagctctgttggattggttgttttgttgtaactcttggttcctg 177  Q
    ||||| ||| |||||||| ||| |||||||||||||||||||||||||||    
T  22767 ctgatatagttctgttgggttgtttgttttgttgtaactcttggttcctg 22816  T

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