View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_18 (Length: 308)
Name: NF15565_low_18
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 54265567 - 54265854
Alignment:
| Q |
18 |
taaatgtgattactgagaccatgatataaatccgaggccctaccaacatttaagattttagattgctcacaaatatagaaatggcagaagagcacctatg |
117 |
Q |
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| T |
54265567 |
taaatgtgattactgagaccatgatataaatccgaggccctaccaacatttaagattttagattgctcacaaatatagaaatggcagaagagcacctatg |
54265666 |
T |
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| Q |
118 |
gaccctaaaactaaagaacatatcctctttaatcgtcgacatgaggtagttacacctacatacggggcgctactgtttgagcgttgacacttcaaattgn |
217 |
Q |
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| T |
54265667 |
gaccctaaaactaaagaacatatcctctttaatcgtcgacatgaggtagttacacctacatacggggcgctactgtttgagcgttgacacttcaaattg- |
54265765 |
T |
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| Q |
218 |
nnnnnnnnnnnnnnnnnnnnggttacaacatactatattttatttcaaaattctccaaataaatcaatggaaaaaactaaaaggaaaata |
307 |
Q |
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| T |
54265766 |
tcttttttttttttttttttggttacaacatactatattttatttcaaaattctccaaat-aatcaatggaaaaaactaaaaggaaaata |
54265854 |
T |
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