View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_21 (Length: 285)
Name: NF15565_low_21
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 39 - 269
Target Start/End: Original strand, 3824958 - 3825189
Alignment:
| Q |
39 |
tcacgttaccttgaatgggaagatactaatattcatcacatttgattttaatcaattaatgtataagattatattgcacggataagaaaacatatttagg |
138 |
Q |
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| T |
3824958 |
tcacgttaccttgtatgggaagatactaatattcatcacatttgattttaatcaattcatgtataagattatattgtacggataagaaaacatatttagg |
3825057 |
T |
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| Q |
139 |
catgtaagggctcactttgggtagacagaaaaattgaagcaattaaaactgctcaatttggttggatttgttttttgt-cgtattcacgaaatctaaaac |
237 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3825058 |
catgtaagggctcactttgggtagacagaaaaattgaagcaattaaaactgctcaatttggttggatttgttttttgtacgtattcacgaaatctaaaac |
3825157 |
T |
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| Q |
238 |
aaatcaaattgatagtaaggacttcaagtttg |
269 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
3825158 |
aaatcaaattgatagtaaggacttcaagtttg |
3825189 |
T |
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