View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_22 (Length: 275)
Name: NF15565_low_22
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 44131195 - 44131449
Alignment:
| Q |
7 |
tcgaagaatatattatccttccttctgctactatatagctgtattatatgtgttctctttataaataaaatgacgttaaagtcctggtcacatattcatt |
106 |
Q |
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| T |
44131195 |
tcgaaaaatatattatccttctttctgctactatatagctgtattatatatgttctctttataaataaaatgacgtcaaagtcctggtcacatattaatt |
44131294 |
T |
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| Q |
107 |
cagtcattggtgttctctcctacatccttcttcaaaccaatatttcacagtaatcattgaannnnnnngaaaatacacttttagtattttaaaatattgt |
206 |
Q |
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| T |
44131295 |
cagtcatcggtgctctctcctacattcttcttcgaaccaatatttcacagtaatcattgaatttttttgaaaatacacttttagtattttaaaatattgt |
44131394 |
T |
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| Q |
207 |
g----aattaaaaatacacttttcaaattatttatttagatttaaagcagataag |
257 |
Q |
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| T |
44131395 |
gaagtaattaaaaatacacttttcaaattatttatttagatttaaagcagataag |
44131449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 28 - 257
Target Start/End: Original strand, 44149804 - 44150039
Alignment:
| Q |
28 |
cttctgctactatatagctgtattatatgtgttctctttataaataaaatgacgttaaagtcctggtcacatattcattcagtcattggtgttctctcct |
127 |
Q |
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| T |
44149804 |
cttctgctactatatagctgtattatctgtgttctctt-ataaataaaatgacgttaaaatcctggtcacatattcattcagtcatcggtgttctctcct |
44149902 |
T |
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| Q |
128 |
acatccttcttcaaaccaatatttcacagtaatcattgaannnnnnngaaaatacacttttagtattttaaaatattgtgaattaaaaatacact----- |
222 |
Q |
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| T |
44149903 |
acatccttcttcaaaccaatatttcacagtaatcattgaatttttttgaaaatacacttttagtattttaaaatattgtgaattaaaaagacagtacaaa |
44150002 |
T |
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| Q |
223 |
--tttcaaattatttatttagatttaaagcagataag |
257 |
Q |
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| T |
44150003 |
gatctcaaattatttatttagatttaaagcagataag |
44150039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 31614036 - 31614085
Alignment:
| Q |
115 |
ggtgttctctcctacatccttcttcaaaccaatatttcacagtaatcatt |
164 |
Q |
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| T |
31614036 |
ggtgttctctcctacatccttcctctaaccaatattttacagcaatcatt |
31614085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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