View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_31 (Length: 210)
Name: NF15565_low_31
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 5568663 - 5568840
Alignment:
| Q |
14 |
atactcataacagtaatccacataaagaatggcaattagaattgccattatacataacatgataataattgctatcaagaactggcagacgtaaatcctt |
113 |
Q |
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| T |
5568663 |
atactcataacagtaatccacataaagaatggcaattagaattgccattatacataacatgataataattgctatcaagaactggcagacgtaaatcctt |
5568762 |
T |
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| Q |
114 |
tatctgctcaaggcatctcttccttaaactgccactcaaatccagatgataacattcctcaatgccaagcgactcgag |
191 |
Q |
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| T |
5568763 |
tatctgctcaaggcatctcttccttaaactgccactcaaatccagatgataacattcctcaatgccaagcgactcgag |
5568840 |
T |
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Target: chr6; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 5573644 - 5573821
Alignment:
| Q |
14 |
atactcataacagtaatccacataaagaatggcaattagaattgccattatacataacatgataataattgctatcaagaactggcagacgtaaatcctt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
5573644 |
atactcataacagtaatccacataaagaatggcaattagaattgccattatacataacatgataataattgctatcaagaactggcagtcttaaatcctt |
5573743 |
T |
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| Q |
114 |
tatctgctcaaggcatctcttccttaaactgccactcaaatccagatgataacattcctcaatgccaagcgactcgag |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5573744 |
tatctgctcaaggcatctcttccttaaactgccactcaaatccagatgataacattcctcaatgccaagcgactcgag |
5573821 |
T |
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