View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_32 (Length: 208)
Name: NF15565_low_32
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 32593470 - 32593300
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32593470 |
ccaagtgcattgagaagtgtacttacatacactccttgagcattcccaagtgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
32593371 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctca |
195 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
32593370 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctgccttcttctca |
32593300 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 51823821 - 51823990
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
51823821 |
ccaagtgcattgagaagtgtacttacatacgctccttgagcatttccaagtgtcacaatcccctctgcctcttttttctttgcgtatagatctgcttcag |
51823920 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctc |
194 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
51823921 |
ctgcttgcttgcacgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctgccttcttctc |
51823990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 31526931 - 31527101
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||| |||||||||||||||||||| |||||||| ||||| | |
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| T |
31526931 |
ccaagtgcattgagaagtgtacttacatacactccttgagcattcccaagtgtcacaatcccctctgcctcttttttctttgcatatagctccgcttcgg |
31527030 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctca |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |
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| T |
31527031 |
ctgcttgcttgcgcgcataaaatgttgcatctgacaatgctttctgtgcttctgcctctgccttcttctca |
31527101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 37030270 - 37030440
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||||||| || ||||||||||||| |
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| T |
37030270 |
ccaagtgcattaagaagtttacttacatacaccccttgagcttgtccaactgtcacaattccctctgcctcctttttctttgcataaagctctgcttcag |
37030369 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctca |
195 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
37030370 |
ctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgccttcttctca |
37030440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 1e-58; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 49187124 - 49187294
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||| ||||||||||| || ||||||||||||| |
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| T |
49187124 |
ccaagtgcattgagaagtgtacttacatacgctccttgagcttgtccaagtgtcacaattccctctgcctcctttttctttgcataaagctctgcttcag |
49187223 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctca |
195 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||| |
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|
| T |
49187224 |
ctgcttgtttgctagcataaaatgttgcatctgccgacgctttctgtgcttctgcctctgccttcttctca |
49187294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 49207059 - 49207229
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||| | |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49207059 |
ccaagtgcattgagaagtgtacttacatacgctccttgagcattcccaagtgtcataatcccctctgcctcttttttctttgcgtatagctctgcttcag |
49207158 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctca |
195 |
Q |
| |
|
|| |||||||||| ||||||||||| | ||||||||||||||| || |||||| ||||||||||| ||||| |
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| T |
49207159 |
cttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgccttcttctca |
49207229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 49211633 - 49211803
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||| | |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
49211633 |
ccaagtgcattcagaagtgtacttacatacgctccttgagcattcccaagtgtcacaatcccctctgcctcttttttctttgcgtacagctctgcttcag |
49211732 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctca |
195 |
Q |
| |
|
|| |||||||||| ||||||||||| | ||||||||||||||| ||||||||| ||||||||||| ||||| |
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| T |
49211733 |
cttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgtgcttctgcctctgccttcttctca |
49211803 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 49202104 - 49202274
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||||| | |
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|
| T |
49202104 |
ccaagtgcattcagaagtgtacttacatacgctccttgagcattcccaagtgtcacaatcccctctgcctcttttttctttgcgtatagctctgcttcgg |
49202203 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctca |
195 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||| | ||||||||||||||| ||||||||||| ||||| |
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|
| T |
49202204 |
cttcttgcttgcaagcataaaatgttgcatctgctgacgctttctgtgcttctgcctctgccttcttctca |
49202274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 49190815 - 49190985
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| |||||||| | |||| ||||||||| || |||||||| ||||||||||| |||||||||||||||| |
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|
| T |
49190815 |
ccaagtgcattgagaagtgcacttagatacaccccttgagcattcccaagtgtcacaattccctctgcctcctttttctttgcatatagctctgcttcag |
49190914 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctca |
195 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||| |||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
49190915 |
ctgcttgcgtgcgagcataaaatgttgcgtctgctaatgctttctgtgcttctgcctctgccttcttctca |
49190985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 26756102 - 26756272
Alignment:
| Q |
25 |
ccaagtgcattgagaagtgtacttacatacactccttgagcttgtccaattgtcacaatcccttctgcctcttttttctttgcgtatagctctgcttcag |
124 |
Q |
| |
|
|||||||| |||||||| ||||||||| |||| |||||| | | |||| |||||| ||||| || ||||| || |||||||| |||||||||||||| | |
|
|
| T |
26756102 |
ccaagtgcgttgagaagggtacttacacacaccccttgaccattcccaagtgtcacgatcccctccgcctccttcttctttgcatatagctctgcttcgg |
26756201 |
T |
|
| Q |
125 |
ctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgccttcatctca |
195 |
Q |
| |
|
||||||| || || |||||||||||||||| |||||||||| ||||||||||| |||||| |||| ||||| |
|
|
| T |
26756202 |
ctgcttgtttacgagcataaaatgttgcatttgccaatgctatctgtgcttctgcctctgtcttcttctca |
26756272 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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