View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_4 (Length: 493)
Name: NF15565_low_4
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 115 - 483
Target Start/End: Original strand, 34130355 - 34130746
Alignment:
| Q |
115 |
gctgaaaaccattaacatcattactattatattttctaattataa-tcatttctttggtccctgcagatggctttattataaactgagcagaaagttgaa |
213 |
Q |
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| T |
34130355 |
gctgaaacccattaacatcattactgttatattttctaattataactcatttctttggtccctgcagatggctttattataaactgagcagaaagttgaa |
34130454 |
T |
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| Q |
214 |
gaggatgaggagcctgaaactactgccaataaaagagacagaagaaaattagaaattgacaattttatttacttcaaggctagggtgccacaaagaatga |
313 |
Q |
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| T |
34130455 |
gaggatgaggagcctgaaactactgccaataaaagagacagaagaaaattagaaattgacaattttatttacttcaaggctagggtgccacaaagaatga |
34130554 |
T |
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| Q |
314 |
tgtaatat----------------------tcattatttggagaggtggtgttaagaactttatgcacacattttgcataaatgatcaccttgtaaatta |
391 |
Q |
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| T |
34130555 |
tgtaatattcaattttggtttaatgtgatgtcattatttggagaggtggtgttaagaactttatgcacacattttgcataaatgatcaccttgtaaatta |
34130654 |
T |
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| Q |
392 |
tataatcaatgcaaatatgcttgtgcacaaaaatcagttgcaccattgacttgtttgttctacatgtttagtgtatatagtatttgcctatg |
483 |
Q |
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| T |
34130655 |
tataatcaatgcaaatatgcttgcgcacaaaaatcagttgcaccattgacttgtttgttctacatgtttagtgtatatagtatttgcctatg |
34130746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 34129683 - 34129759
Alignment:
| Q |
3 |
cgtaaatttgttgccctttgcttttgtttttacctgaaataaagcttctgatgccttagttagggtaaagttttgaa |
79 |
Q |
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| T |
34129683 |
cgtaaatttgtttccctttgcttttgtttttacctgaaataaagcttctgatgccttagttagggtaatgttttgaa |
34129759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 34129778 - 34129813
Alignment:
| Q |
78 |
aatattttggagtgagggttttcctagaggaggttc |
113 |
Q |
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| T |
34129778 |
aatattttggagtgagggttttcctagaggaggttc |
34129813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 48559469 - 48559585
Alignment:
| Q |
163 |
tttctttggtccctgcagatggctttattataaactgagcagaaagttgaagaggatgaggagcctgaaactactgccaataaaagagac-agaagaaaa |
261 |
Q |
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| T |
48559469 |
tttcttttgtcactgcagctggctttattagaagctgagcagaaagctgaagaggctgaggggcctgaaactagtatgaagaaaagaggcaagaagaaaa |
48559568 |
T |
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| Q |
262 |
ttagaaattgacaattt |
278 |
Q |
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| T |
48559569 |
ctagaaattgataattt |
48559585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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