View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15565_low_6 (Length: 410)

Name: NF15565_low_6
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15565_low_6
NF15565_low_6
[»] chr3 (11 HSPs)
chr3 (60-401)||(54346747-54347088)
chr3 (80-401)||(27156033-27156354)
chr3 (96-372)||(43812988-43813263)
chr3 (52-394)||(46428575-46428916)
chr3 (212-394)||(42794505-42794687)
chr3 (202-394)||(54812236-54812428)
chr3 (284-394)||(43912322-43912432)
chr3 (278-397)||(51841259-51841377)
chr3 (55-121)||(36275954-36276018)
chr3 (52-141)||(42794758-42794846)
chr3 (60-141)||(54812095-54812175)
[»] chr7 (13 HSPs)
chr7 (60-401)||(8019591-8019931)
chr7 (60-401)||(48618946-48619287)
chr7 (52-392)||(29213567-29213907)
chr7 (202-394)||(24473467-24473659)
chr7 (202-314)||(24468599-24468711)
chr7 (53-141)||(5791302-5791390)
chr7 (66-141)||(46046084-46046158)
chr7 (203-261)||(8035768-8035826)
chr7 (75-141)||(38110538-38110604)
chr7 (52-141)||(8035888-8035977)
chr7 (52-141)||(24468772-24468860)
chr7 (52-141)||(24473720-24473808)
chr7 (339-395)||(46045830-46045886)
[»] chr1 (12 HSPs)
chr1 (67-401)||(23949710-23950044)
chr1 (60-401)||(5308654-5308995)
chr1 (60-364)||(42677240-42677544)
chr1 (60-396)||(23084758-23085092)
chr1 (60-401)||(50952411-50952754)
chr1 (60-397)||(34553719-34554055)
chr1 (60-394)||(22065048-22065381)
chr1 (269-391)||(2601205-2601326)
chr1 (75-141)||(6294193-6294259)
chr1 (75-141)||(38168202-38168268)
chr1 (52-122)||(39476256-39476326)
chr1 (339-395)||(6293939-6293995)
[»] chr8 (8 HSPs)
chr8 (60-401)||(1636010-1636351)
chr8 (60-401)||(26616572-26616911)
chr8 (64-401)||(456212-456547)
chr8 (202-394)||(44145724-44145915)
chr8 (204-394)||(38560608-38560798)
chr8 (52-141)||(45093618-45093707)
chr8 (57-141)||(33373375-33373458)
chr8 (84-141)||(42000452-42000509)
[»] chr2 (13 HSPs)
chr2 (60-401)||(13186900-13187240)
chr2 (60-315)||(40426013-40426268)
chr2 (161-401)||(7305027-7305267)
chr2 (52-342)||(6598990-6599281)
chr2 (80-401)||(40190285-40190606)
chr2 (97-364)||(37307177-37307444)
chr2 (202-394)||(17290048-17290240)
chr2 (60-124)||(7304964-7305027)
chr2 (52-141)||(24126256-24126345)
chr2 (185-397)||(26381237-26381454)
chr2 (75-141)||(42866094-42866160)
chr2 (68-141)||(40614906-40614979)
chr2 (339-395)||(42865840-42865896)
[»] chr4 (12 HSPs)
chr4 (60-401)||(34389651-34389992)
chr4 (84-401)||(36894286-36894603)
chr4 (204-394)||(47597580-47597770)
chr4 (202-277)||(4228307-4228382)
chr4 (75-261)||(1217216-1217402)
chr4 (52-127)||(44307715-44307790)
chr4 (52-261)||(28945210-28945418)
chr4 (80-144)||(861270-861334)
chr4 (298-394)||(43270874-43270970)
chr4 (203-261)||(44307581-44307639)
chr4 (339-395)||(1369357-1369413)
chr4 (339-395)||(28945496-28945552)
[»] chr5 (14 HSPs)
chr5 (60-401)||(18258985-18259326)
chr5 (52-401)||(22540222-22540571)
chr5 (80-401)||(34080607-34080925)
chr5 (202-394)||(4560304-4560496)
chr5 (202-394)||(18934072-18934264)
chr5 (204-394)||(18883400-18883590)
chr5 (84-152)||(13236721-13236789)
chr5 (278-397)||(32216808-32216927)
chr5 (80-144)||(7531127-7531191)
chr5 (75-141)||(239835-239901)
chr5 (75-141)||(14025112-14025178)
chr5 (104-141)||(18934325-18934362)
chr5 (339-395)||(14024858-14024914)
chr5 (223-372)||(32785942-32786093)
[»] chr6 (3 HSPs)
chr6 (285-394)||(1223033-1223142)
chr6 (60-253)||(1222827-1223019)
chr6 (101-146)||(20679026-20679071)


Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 60 - 401
Target Start/End: Complemental strand, 54347088 - 54346747
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54347088 agagggcaaagcccaaaaaaaaacaaaattaagaagttaatcgaacattcctaggcatgtaagccccggataaatcatcaaaaaggattcttttgacctc 54346989  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54346988 acaaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgg 54346889  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  54346888 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcga 54346789  T
Q  360 tcaaactctttgaatcactttccactataagatgagaataat 401  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  54346788 tcaaaatctttgaatcactttccactataagatgagagtaat 54346747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 80 - 401
Target Start/End: Original strand, 27156033 - 27156354
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctcacaaggaggagaatccagca 179  Q
    ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||    
T  27156033 aaacaaacttaagaagttaatcgaacgttcctaggcatgcaagctccggataaatcattaaaaaggattcttttgacctcacaaggaggagactccaaca 27156132  T
Q  180 caagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaact 279  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  27156133 ctagaaaattaaaatgatctgtagaaatgctgaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagttgaacattccaact 27156232  T
Q  280 catcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactt 379  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||    
T  27156233 catcttcagcagcttccggatccggtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcgatcaaaatctttgaatcactt 27156332  T
Q  380 tccactataagatgagaataat 401  Q
    ||||||||||||||||| ||||    
T  27156333 tccactataagatgagagtaat 27156354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 96 - 372
Target Start/End: Complemental strand, 43813263 - 43812988
Alignment:
Q  96 ttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctcacaaggaggagaatccagcacaagaaaattaaaatg 195  Q
    |||||||||||||||||||||| ||| |  |||||||||||||||||| || |  || |||||||| ||||||||| | || ||  |  ||||||||  |    
T  43813263 ttaatcgaacattcctaggcatacaaactacggataaatcatcaaaaatgagttattggacctcactaggaggagacttcaacaacaacaaattaaac-g 43813165  T
Q  196 atctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttc 295  Q
    |||| ||||||||||||| |||||||| |||||| |||||| |||||||||||||||| ||||| ||||||||||||| |||||||||| || || |||     
T  43813164 atctatagaaatgcttaagttagcgagtcaatcagcactccaatttccttcacgccaattatggttgagttgaacatttcaactcatctgcaacaacttt 43813065  T
Q  296 cggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttga 372  Q
     |||| ||||||||||||||| ||||||| |||||  | |||||||||||||||||||| || |||||| |||||||    
T  43813064 tggatccggtaaactaaaacatgaatattgccattacatttgaaattatcagaaatcatatcgatcaaaatctttga 43812988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 394
Target Start/End: Complemental strand, 46428916 - 46428575
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattctt 151  Q
    |||| ||||||||||||||||||| || ||| ||| | | ||| |||| || ||||||||||||||||||||| |||| | ||||||||| | ||  |||    
T  46428916 ggtacaaaagagggcaaagcccaagagaaaagaaact-acgaaattaaacggacattcctaggcatgcaagcctcggaaatatcatcaaacatgag-ctt 46428819  T
Q  152 ttgac-ctcacaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgc 250  Q
    | ||  ||||  ||||||||  ||||  | ||  ||||| |||||||    | ||||||| |||||||| ||||||||  |||| |||||||||||| ||    
T  46428818 tcgaagctcaataggaggagtctccaaaataatcaaattcaaatgattcacataaatgctaaaattagcaagccaatcggcacttctatttccttcatgc 46428719  T
Q  251 caagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaa 350  Q
    ||||||||| ||| ||| |||| ||||  |||  |||||||||||| |||||| | |||||||| ||| ||||||||||| |||||||| || |||||||    
T  46428718 caagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaactaaaataggcatattcccattaaacttgaacttgtcagaaa 46428619  T
Q  351 tcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
    ||||||| |||||  |||| || ||||||||||| |||||||||    
T  46428618 tcatgtcgatcaatatcttcgagtcactttccacaataagatga 46428575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 394
Target Start/End: Complemental strand, 42794687 - 42794505
Alignment:
Q  212 aaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaacta 311  Q
    |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| |||||| | |||||    
T  42794687 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgatacgatgaacta 42794588  T
Q  312 aaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
    ||| ||| ||||||||||| |||||||| || | |||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  42794587 aaataggcatattcccattaaacttgaacttgttagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 42794505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 202 - 394
Target Start/End: Original strand, 54812236 - 54812428
Alignment:
Q  202 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 301  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| | ||  |||  |||||||||||| ||||    
T  54812236 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgctaatccattctcagcagcttcctgata 54812335  T
Q  302 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
    || | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  54812336 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 54812428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 394
Target Start/End: Original strand, 43912322 - 43912432
Alignment:
Q  284 ttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 383  Q
    |||| |||||||| |||||| | | |||||| ||  ||||||||||| |||||||| || |||||||||||||  |||||  ||||||| |||||||| |    
T  43912322 ttcaacagcttcctgatacgatgagctaaaatagagatattcccattaaacttgaacttctcagaaatcatgttgatcaatatctttgagtcactttcaa 43912421  T
Q  384 ctataagatga 394  Q
    |||||||||||    
T  43912422 ctataagatga 43912432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 397
Target Start/End: Original strand, 51841259 - 51841377
Alignment:
Q  278 ctcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcac 377  Q
    ||||||||||| | ||| |||||||| | |||||||| ||| ||| |||| ||||| |||||||| |||||| | ||||| |||||   |||||| ||||    
T  51841259 ctcatcttcagaacctttcggatacgctcaactaaaatagggatagtccctttgaaattgaaattgtcagaagt-atgtcgatcaataactttgagtcac 51841357  T
Q  378 tttccactataagatgagaa 397  Q
    | ||||||||||||||||||    
T  51841358 tctccactataagatgagaa 51841377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 36276018 - 36275954
Alignment:
Q  55 ataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaa 121  Q
    |||||||| |||||||||||||  |||| ||||||| ||| |||| |||||||||||| ||||||||    
T  36276018 ataaaagaaggcaaagcccaaa--gaaaaaaaattatgaaattaaacgaacattcctaagcatgcaa 36275954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 42794846 - 42794758
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||| ||||||||||||||||||  || ||| ||| | | ||| |||| || |||||||||||| ||||||||||||| | |||||||||    
T  42794846 ggtacaaaagagggcaaagcccaggagaaaagaaact-acgaaattaaccgcacattcctaggcgtgcaagccccggaaatatcatcaaa 42794758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 54812095 - 54812175
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    ||||||||||||||||||| ||| ||| |   ||| |||| || |||||||||||||||||||||| ||| | |||||||||    
T  54812095 agagggcaaagcccaaaagaaaagaaactgc-gaaattaaccggacattcctaggcatgcaagcccgggaaatatcatcaaa 54812175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 60 - 401
Target Start/End: Original strand, 8019591 - 8019931
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8019591 agagggcaaagcccaaaagaaaacaaaattaagaagttaatcgaacattcttaggcatgcaagtcccggataaatcatcaaaaaggattcttttgacctc 8019690  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8019691 acaaggaggagactccagcacaagaaaattaaa-tgatctgtagaattacttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgg 8019789  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8019790 gtgagttgaacattccaactcatcttcagcagattccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcga 8019889  T
Q  360 tcaaactctttgaatcactttccactataagatgagaataat 401  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  8019890 tcaaaatctttgaatcactttccactataagatgagagtaat 8019931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 60 - 401
Target Start/End: Complemental strand, 48619287 - 48618946
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    |||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  48619287 agagggcaaagctcaaaagaaaacaaaattaagaagctaatcgaacattcctaagcatgcaagccccggataaatcatcaaaaaggattcttttgatctc 48619188  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    | |||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  48619187 agaaggaggagactccaacactagaaaattaaaatgatttgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaagtatgg 48619088  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  48619087 ttgagttgaacattccaactcatcttcagcagcttccggatacagtaaactaaaacaggaatattcccattaaacttgaaattatcagaaatcatgtcaa 48618988  T
Q  360 tcaaactctttgaatcactttccactataagatgagaataat 401  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||    
T  48618987 tcaaaatctttgaatcactttccactataagataagagtaat 48618946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 52 - 392
Target Start/End: Original strand, 29213567 - 29213907
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattctt 151  Q
    ||||||| |||||||||||| ||| |  |||||||| ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  29213567 ggtataagagagggcaaagctcaacaa-aaacaaaactaacaagctaatcgaacattcctaggcatgcaagcccaggataaatcatcaaaaaagattctt 29213665  T
Q  152 ttgacctcacaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcc-tatttccttcacgc 250  Q
    | |||||||| ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | |||| |||||||    
T  29213666 tggacctcactaggaggagactccaacacaagaaaattaaagtgatctgtagaaatgcttaaattagcgagtcaatcaacactccttttttctttcacgc 29213765  T
Q  251 caagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaa 350  Q
    ||||||||| |||||||||||||||||||||||||||  |||||| |||| |||| || |||||||| |||||| |||||||||||||||||||||||||    
T  29213766 caagtatggttgagttgaacattccaactcatcttcaatagcttctggatccggtgaagtaaaacagaaatatttccattgaacttgaaattatcagaaa 29213865  T
Q  351 tcatgtcaatcaaactctttgaatcactttccactataagat 392  Q
    ||||||| |||||| ||||||||||||||||||||| |||||    
T  29213866 tcatgtcgatcaaaatctttgaatcactttccactacaagat 29213907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 202 - 394
Target Start/End: Complemental strand, 24473659 - 24473467
Alignment:
Q  202 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 301  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  24473659 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 24473560  T
Q  302 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
    || | |||||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  24473559 cgatgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 24473467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 202 - 314
Target Start/End: Complemental strand, 24468711 - 24468599
Alignment:
Q  202 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 301  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  24468711 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 24468612  T
Q  302 cggtaaactaaaa 314  Q
    || | ||||||||    
T  24468611 cgatgaactaaaa 24468599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 5791302 - 5791390
Alignment:
Q  53 gtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||||||||||||||| |||  |||| |||| |||||| |||| || || ||| ||| ||||||||||||| | | |||||||||    
T  5791302 gtataaaagagggcaaagcctaaagagaaagaaaactaagaaattaaacggacgttcttagacatgcaagccccgaaaatatcatcaaa 5791390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 46046158 - 46046084
Alignment:
Q  66 caaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    ||||||||||| ||||| |||| |||||| |||| || || ||||||| ||||||||||||||| | |||||||||    
T  46046158 caaagcccaaa-ggaaagaaaactaagaaattaaacggacgttcctagacatgcaagccccggaaatatcatcaaa 46046084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 8035826 - 8035768
Alignment:
Q  203 gaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggt 261  Q
    |||||||| |||||||| ||||||||  |||| || || ||||||||||||||||||||    
T  8035826 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaagtatgggt 8035768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 38110538 - 38110604
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||| |||| |||||| |||| || || |||||||||||||||||||| || | |||||||||    
T  38110538 aaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaa 38110604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 8035977 - 8035888
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||| ||||||||||||||| ||||   ||| |||| |||||| |||| |  || || |||||||||||||||||||| | |||||||||    
T  8035977 ggtacaaaagagggcaaagctcaaagaaaaagaaaactaagaaattaaactgacgtttctaggcatgcaagccccggaaatatcatcaaa 8035888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 24468860 - 24468772
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||| ||||||||||||||||||| || ||| ||| | | ||| |||| || |||||||| ||||| ||||||||||| | |||||||||    
T  24468860 ggtacaaaagagggcaaagcccaagagaaaagaaact-acgaaattaaccggacattcctcggcattcaagccccggaaatatcatcaaa 24468772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 24473808 - 24473720
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||| ||||||||||||||||||| || ||| ||| | | ||| |||| || |||||||| ||||| ||||||||||| | |||||||||    
T  24473808 ggtacaaaagagggcaaagcccaagagaaaagaaact-acgaaattaaccggacattcctcggcattcaagccccggaaatatcatcaaa 24473720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 46045886 - 46045830
Alignment:
Q  339 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 395  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  46045886 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 46045830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 67 - 401
Target Start/End: Complemental strand, 23950044 - 23949710
Alignment:
Q  67 aaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctcacaagga 166  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  23950044 aaagcccaaaagaaaacaaaattaagaagttaatcgaacattcctaggcatgcaaaccccggataaatcatcaaaaatgattcttttgacctcacaagga 23949945  T
Q  167 ggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagtt 266  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  23949944 ggagactccaacacaataaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttgagtt 23949845  T
Q  267 gaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaact 366  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  23949844 gaacattctaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcgatcaaaat 23949745  T
Q  367 ctttgaatcactttccactataagatgagaataat 401  Q
    |||||||||||||||||||||||||||||| ||||    
T  23949744 ctttgaatcactttccactataagatgagattaat 23949710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 60 - 401
Target Start/End: Complemental strand, 5308995 - 5308654
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||    
T  5308995 agagggcaaagcccaaaagtaaacaaaattaagaagttaatcgaacattcctaggcatgcaagtcctggataaatcatcaaaaatgattcttttgacctc 5308896  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  5308895 acaaggaggagactccaacacaagaaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgg 5308796  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  5308795 ttgagttgaacattccaactcatcttcagcagattccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcga 5308696  T
Q  360 tcaaactctttgaatcactttccactataagatgagaataat 401  Q
    ||||| ||||||| ||||||||||||||||||||||| ||||    
T  5308695 tcaaaatctttgattcactttccactataagatgagagtaat 5308654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 60 - 364
Target Start/End: Complemental strand, 42677544 - 42677240
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  42677544 agagggcaaagcccaaaagaaaacaaaattaagaagttaatcgaatattcctaggcatgcaagccccagataaatcatcaaaaaggattcttttgacctc 42677445  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42677444 acaaggaggagactccaacactagaaaattaaaaagatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgg 42677345  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  42677344 ttgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcga 42677245  T
Q  360 tcaaa 364  Q
    |||||    
T  42677244 tcaaa 42677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 60 - 396
Target Start/End: Original strand, 23084758 - 23085092
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| ||||||||||    
T  23084758 agagggcaaagcccaaaa--aaataaaattaaggagttaatcgaacattcctaggtatgcaagctccggataaatcatcaaaaatgattattttgacctc 23084855  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| |||| ||| ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  23084856 acaaggaggagactccaacactagaaaattaaaatgatacgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaaatatgg 23084955  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |    
T  23084956 ttgagttgaacattccaactcatcttcagcagcttccggatccggtaaactaaaacatgaatattcccattgaacttgaaattatcaaaaatcatgtcga 23085055  T
Q  360 tcaaactctttgaatcactttccactataagatgaga 396  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  23085056 tcaaaatctttaaatcactttccactataagatgaga 23085092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 60 - 401
Target Start/End: Original strand, 50952411 - 50952754
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttg--acc 157  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| ||||| ||| |||||   |      
T  50952411 agagggcaaagtccaaaagaaaacaaaattaagaagctaatcgaacattcctaggtatgcaagccccagataaatcataaaaaatgatacttttttaatt 50952510  T
Q  158 tcacaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtat 257  Q
    |||||||||||| | |||| ||| |||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  50952511 tcacaaggaggatactccaacactagaaaattaaaaagatctgtagaaatgcttatattagcgagccaatcagcactcctattttcttcacgccaagtat 50952610  T
Q  258 gggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtc 357  Q
    || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50952611 ggttgagttgaacattccaactcatcttcagcagcttccggatccggtaaactaaaacatgaatattcccattgaacttgaaattatcagaaatcatgtc 50952710  T
Q  358 aatcaaactctttgaatcactttccactataagatgagaataat 401  Q
     |||||| ||||||||||||||||||||||||||| ||| ||||    
T  50952711 gatcaaaatctttgaatcactttccactataagattagagtaat 50952754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 60 - 397
Target Start/End: Original strand, 34553719 - 34554055
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    |||| |||||||||||||  ||| |||| ||| ||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||| ||| ||||||    
T  34553719 agagagcaaagcccaaaaaaaaa-aaaactaacaagctaatcgaacattcataggcatgcaagctctggataaatcatcaaaaaggattttttggacctc 34553817  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    || ||||||||| |||| ||||||||||||||| |||| |||| ||||| ||||||||||||| |||||| |||| ||||||||||||| ||||||||||    
T  34553818 actaggaggagactccaacacaagaaaattaaagtgatatgtataaatgtttaaattagcgagtcaatcagcacttctatttccttcacaccaagtatgg 34553917  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
     |||||||||||||| ||||||||||||||| |||| |||| | || |||||||| || |||||||||||  || |  |||||||||||||||||||| |    
T  34553918 ttgagttgaacattctaactcatcttcagcatcttctggatccagtgaactaaaatagaaatattcccatcaaattcaaaattatcagaaatcatgtcga 34554017  T
Q  360 tcaaactctttgaatcactttccactataagatgagaa 397  Q
    | ||| ||||||||||||||||||||||||||||||||    
T  34554018 taaaaatctttgaatcactttccactataagatgagaa 34554055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 60 - 394
Target Start/End: Original strand, 22065048 - 22065381
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgac-ct 158  Q
    |||||||||||||||| || ||| ||| | | ||| |||| || |||||||||||||||||||||||||| | ||||||||| | ||  |||| ||  ||    
T  22065048 agagggcaaagcccaagagaaaagaaact-acgaaattaaccggacattcctaggcatgcaagccccggaaatatcatcaaacatgag-ctttcgaagct 22065145  T
Q  159 cacaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatg 258  Q
    ||  ||||||||  ||||  | ||  ||||| |||||||    ||| ||||| |||||||| ||||||||  |||| |||||||||||||||||||||||    
T  22065146 caataggaggagtctccaaaataatcaaattcaaatgattcacagatatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatg 22065245  T
Q  259 ggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtca 358  Q
    | ||| ||| |||| ||||  |||  |||||||| ||| |||||| | |||||||| ||| | ||||||||| |||||||| || ||||||||||||||     
T  22065246 gttgatttgcacatgccaatccattctcagcagcctcctgatacgatgaactaaaataggcacattcccattaaacttgaacttgtcagaaatcatgtcg 22065345  T
Q  359 atcaaactctttgaatcactttccactataagatga 394  Q
    |||||  |||| || ||||||||||| |||||||||    
T  22065346 atcaatatcttcgagtcactttccacaataagatga 22065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 391
Target Start/End: Complemental strand, 2601326 - 2601205
Alignment:
Q  269 acattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactct 368  Q
    |||| |||| |||| ||||||||||||  ||||  || |||||||| ||  |||||| |||| |||||||| || |||||| ||||||| || ||  |||    
T  2601326 acatcccaattcatgttcagcagcttcatgatatagtgaactaaaatagttatattctcattaaacttgaatttgtcagaattcatgtcgat-aatatct 2601228  T
Q  369 ttgaatcactttccactataaga 391  Q
    | |||||||||||||||||||||    
T  2601227 tagaatcactttccactataaga 2601205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 6294259 - 6294193
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||| |||| |||||| |||| || || ||||||||||||||||||||||| | |||||||||    
T  6294259 aaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaa 6294193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 38168202 - 38168268
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||| |||| |||||| |||| || || ||||||||||||||||||||||| | |||||||||    
T  38168202 aaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaa 38168268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 39476326 - 39476256
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaag 122  Q
    |||||||||||||| |||  |||||| |||| |||| |||||| |||| || || ||||||||||||||||    
T  39476326 ggtataaaagaggggaaaatccaaaaagaaagaaaagtaagaaattaaacggacgttcctaggcatgcaag 39476256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 6293995 - 6293939
Alignment:
Q  339 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 395  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  6293995 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 6293939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 60 - 401
Target Start/End: Complemental strand, 1636351 - 1636010
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||| |||||||||||||||| ||||||||||| |||    
T  1636351 agaggacaaagcccaaaagaaaacaaaattaaaaagttaatcgaacatttctaggcatgcaagtcccagataaatcatcaaaaatgattcttttgatctc 1636252  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    | |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  1636251 aaaaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgattaaattagcgagccaatcagcactcctatttccttcacgctaagtatgg 1636152  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1636151 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcga 1636052  T
Q  360 tcaaactctttgaatcactttccactataagatgagaataat 401  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  1636051 tcaaaatctttgaatcactttccactataagatgagagtaat 1636010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 60 - 401
Target Start/End: Original strand, 26616572 - 26616911
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    |||||||||| |||||||  ||| |||||||||||| |||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||||| ||    
T  26616572 agagggcaaaacccaaaaaaaaataaaattaagaagctaatcgaacatttctaggcatgcaagcttcggataaatcatcaaaaatgattcttttgacatc 26616671  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||  |||| |||||||||||||||||||||||    
T  26616672 acaaggaggagactccaacactagaaaattaaaatgatctgtagaaatgcttaaattagtgagccaatcagtactcatatttccttcacgccaagtatgg 26616771  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
     |||||||||||||||||||||||||||||||||||| ||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |    
T  26616772 ttgagttgaacattccaactcatcttcagcagcttccagatccggtaaact--aacaggaatattcccattgaacttgaaattatcagaaatcatgtcga 26616869  T
Q  360 tcaaactctttgaatcactttccactataagatgagaataat 401  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  26616870 tcaaaatctttgaatcactttccactataagatgagagtaat 26616911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 64 - 401
Target Start/End: Original strand, 456212 - 456547
Alignment:
Q  64 ggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctcacaa 163  Q
    ||||||||||||||  |||| ||| ||| ||| ||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||| ||||| |  |    
T  456212 ggcaaagcccaaaa--aaaccaaactaaaaagataatcaaacattcataggcatgcaagtcccggataaataatcaaaaaggattctttggaccttatta 456309  T
Q  164 ggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtga 263  Q
    |||||| | |||||||| | ||||| ||| ||||  ||||||||| |||||||||||||||||| | |||||||||||||||| || ||||||||| |||    
T  456310 ggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagccaattagcactcctatttccttcgcgtcaagtatggttga 456409  T
Q  264 gttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaa 363  Q
    ||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  456410 gttgaacattccaactcatcttcagtagcttccggatccggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatatcaatcaa 456509  T
Q  364 actctttgaatcactttccactataagatgagaataat 401  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  456510 actctttgaatcactttccactataagatgagagtaat 456547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 202 - 394
Target Start/End: Complemental strand, 44145915 - 44145724
Alignment:
Q  202 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 301  Q
    ||||||||| |||||||| || |||||| |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  44145915 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 44145816  T
Q  302 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
    || | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  44145815 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac-ataagatga 44145724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 394
Target Start/End: Original strand, 38560608 - 38560798
Alignment:
Q  204 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacg 303  Q
    ||||||| |||||||| ||||||||  |||| |||||||||||  ||||||||||| ||| ||| |||| ||||  |||  |||||||||||  ||||||    
T  38560608 aaatgctaaaattagcaagccaatcggcacttctatttccttcgtgccaagtatggttgatttgcacatgccaatccattctcagcagcttcttgatacg 38560707  T
Q  304 gtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
     | |||||||| ||| ||||||||||| || |||||  |||||||||||| ||| |||||  |||| ||  ||||||||||||||||||||    
T  38560708 atgaactaaaatagggatattcccattaaatttgaacctatcagaaatcacgtcgatcaatatcttcgagccactttccactataagatga 38560798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 45093707 - 45093618
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||| ||||||||||||||||||||   ||| |||| |||||| |||| || || ||||||||||||||||||||||| | |||||||||    
T  45093707 ggtacaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaa 45093618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 141
Target Start/End: Complemental strand, 33373458 - 33373375
Alignment:
Q  57 aaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||||||||||||||| ||||| |||| |||||| |||| || || ||||||||||||||||| ||||| | |||||||||    
T  33373458 aaaagagggcaaagcccaaa-ggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaa 33373375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 42000509 - 42000452
Alignment:
Q  84 aaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||| |||||| |||| |||||||||||| |||||||||||||||| | |||||||||    
T  42000509 aaaactaagaaattaaacgaacattcctatgcatgcaagccccggaaatatcatcaaa 42000452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 60 - 401
Target Start/End: Complemental strand, 13187240 - 13186900
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  13187240 agagggcaaagcccaaaagaaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccgaataaatcatcaaaaaggattcttt-gacctc 13187142  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  13187141 acaaggaggagactccaacacaataaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatga 13187042  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
     |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  13187041 ttgagttgaacattccaactcgtcttcagcagcttccggatacggtaaactaaaacaggaatatttccattgaacttgaaattatcagaaatcatgtcga 13186942  T
Q  360 tcaaactctttgaatcactttccactataagatgagaataat 401  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  13186941 tcaaaatctttgaatcactttccactataagatgagagtaat 13186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 60 - 315
Target Start/End: Original strand, 40426013 - 40426268
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40426013 agagggcaaagcccaaaagaaaacaagattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaagattcttttgacctc 40426112  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||| |||||    
T  40426113 acaaggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagtcaatcagcactcctatttccttcacaccaaatatgg 40426212  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40426213 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaac 40426268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 161 - 401
Target Start/End: Original strand, 7305027 - 7305267
Alignment:
Q  161 caaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggg 260  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  7305027 caaggaggagactccaacactagaaaattaaagtgatctgtagaaatgcttaaattagagagccaatcagcactcctatttccttcacgccaagtatggt 7305126  T
Q  261 tgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaat 360  Q
    ||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||||||||||||||||| |||||||||||| ||    
T  7305127 tgagttgaaaattccaactcatcttcagcaggttccggatccggtaaagtaaaacaggaatattctcattgaacttgaaattattagaaatcatgtcgat 7305226  T
Q  361 caaactctttgaatcactttccactataagatgagaataat 401  Q
    |||| ||||||||||||||||||||||||||||||| ||||    
T  7305227 caaaatctttgaatcactttccactataagatgagagtaat 7305267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 52 - 342
Target Start/End: Complemental strand, 6599281 - 6598990
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaaca-aaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattct 150  Q
    |||| |||||| ||||||||||||||  ||| | ||| ||| ||| ||| ||||||||| |||||||||||||||||||||||||||||||||| ||| |    
T  6599281 ggtacaaaagatggcaaagcccaaaaaaaaaaacaaactaaaaagctaaacgaacattcttaggcatgcaagccccggataaatcatcaaaaagtatttt 6599182  T
Q  151 tttgacctcacaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgc 250  Q
    || |||||||| ||||||||| |||| ||| | ||||| ||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  6599181 ttggacctcactaggaggagactccaacactaaaaaatcaaagtgatatgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgc 6599082  T
Q  251 caagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaatt 342  Q
    ||| ||||| ||||||||||||||||| |||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  6599081 caattatggttgagttgaacattccaattcatcttcagcaacttccggatccggtgaactaaaacaggaatattcccattgaacttgaaatt 6598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 80 - 401
Target Start/End: Original strand, 40190285 - 40190606
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctcacaaggaggagaatccagca 179  Q
    |||||||||||| ||| ||||||||||||| ||| |||||||| | |||||||||||| |||||||||||||  || ||||| ||||||||| |||| ||    
T  40190285 aaacaaaattaaaaagctaatcgaacattcttagacatgcaagtctcggataaatcattaaaaaggattcttcggatctcactaggaggagattccaaca 40190384  T
Q  180 caagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaact 279  Q
    | || |||||||| ||||| ||| |||||||||| |||| ||| ||||| |||||||||||||||||| | ||||||||| |||||||||||||||||||    
T  40190385 ctagtaaattaaagtgatccgtataaatgcttaagttagtgagtcaatctacactcctatttccttcatgtcaagtatggttgagttgaacattccaact 40190484  T
Q  280 catcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactt 379  Q
    |||||||||||| ||  ||||  |||  ||||||| ||||||||   |||||||||| ||||||||||||||||| || |||||| ||||||||||||||    
T  40190485 catcttcagcagttttgggatctggtggactaaaataggaatatgttcattgaacttaaaattatcagaaatcatatcgatcaaaatctttgaatcactt 40190584  T
Q  380 tccactataagatgagaataat 401  Q
    ||||||||||||||||| ||||    
T  40190585 tccactataagatgagagtaat 40190606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 97 - 364
Target Start/End: Original strand, 37307177 - 37307444
Alignment:
Q  97 taatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctcacaaggaggagaatccagcacaagaaaattaaaatga 196  Q
    |||||||| ||||||||||||||||| || |||||||||||| ||||||||||||| |||||| | || |||||| |||| ||  || |||||||| |||    
T  37307177 taatcgaagattcctaggcatgcaagtcctggataaatcatctaaaaggattctttggacctcgctagaaggagactccaacattagtaaattaaagtga 37307276  T
Q  197 tctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttcc 296  Q
    || |||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| ||| ||| |    
T  37307277 tccgtagaaatgcttaagttaacgagccaatcagcactcctatttccttcacgtcaagtatggttgagttgaacatttcaactcatcttcggcaactttc 37307376  T
Q  297 ggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaa 364  Q
     ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  37307377 agatccggtaaactaaaacaggaatattctcattgaacttgaaattatcagaaatcatgtcgatcaaa 37307444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 202 - 394
Target Start/End: Complemental strand, 17290240 - 17290048
Alignment:
Q  202 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 301  Q
    |||||| || |||||||| ||||||||  |||| |||||||||||||||||| ||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  17290240 agaaatactaaaattagcaagccaatcggcacttctatttccttcacgccaaatatggttgatttgcacatgccaatccattctcagcagcttcctgata 17290141  T
Q  302 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
    || | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  17290140 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 17290048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 7304964 - 7305027
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagcc 124  Q
    ||||||||||||||||||  |||||||| ||||||| ||||||||||||| ||||||||||||||    
T  7304964 agagggcaaagcccaaaaa-aaacaaaactaagaagctaatcgaacattcttaggcatgcaagcc 7305027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 24126256 - 24126345
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||| ||||||||||||||||||||   ||| |||| |||||| |||| || |  ||||||||||||||||||| ||| | |||||||||    
T  24126256 ggtacaaaagagggcaaagcccaaagaaaaagaaaactaagaaattaaacggaagttcctaggcatgcaagccctggaaatatcatcaaa 24126345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 397
Target Start/End: Original strand, 26381237 - 26381454
Alignment:
Q  185 aaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatct 284  Q
    ||||| ||||||||  ||| |||||| |  ||||| |||||||||| |||  |||||||||||| | |||||||| ||| ||| |||| ||| |||||||    
T  26381237 aaattcaaatgatccttagtaatgctgatgttagcaagccaatcaaaacttttatttccttcacacgaagtatggttgatttgcacatgccatctcatct 26381336  T
Q  285 tcagcagcttccggatacggtaa----actaaaacagga-atattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactt 379  Q
    |||| ||||   ||||| | |      ||||||| |||  |||||||| ||||| |  ||||| ||||||||||||||||||||| |||||||  | ||     
T  26381337 tcagaagctattggatatgttggttggactaaaataggggatattcccgttgaaatgaaaattgtcagaaatcatgtcaatcaaaatctttgagccgctc 26381436  T
Q  380 tccactataagatgagaa 397  Q
    |||||| | |||||||||    
T  26381437 tccacttttagatgagaa 26381454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 42866160 - 42866094
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||| |||| |||||| |||| || || ||||||||||||||||| ||||| | |||||||||    
T  42866160 aaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaa 42866094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 40614906 - 40614979
Alignment:
Q  68 aagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||||  |||| |||| |||||| |||| || || |||||||||||||||||||| || | |||||||||    
T  40614906 aagcccaaagagaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccagaaatatcatcaaa 40614979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 42865896 - 42865840
Alignment:
Q  339 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 395  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  42865896 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 42865840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 60 - 401
Target Start/End: Original strand, 34389651 - 34389992
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34389651 agagggcaaagcccaaaagaaaacaaaattaagaagctaatcgaacattcctaggcatgtaagccccggataaatcatcaaaaaggattcttttgacctc 34389750  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| |||| ||| | |||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  34389751 acaaggaggagactccaacactaaaaaattaaaatgatatgtaaaaatgcttaaattagcgagccaatcagcactcctatttccttcacgctaagtatgg 34389850  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
     ||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  34389851 ttgagttgaacattccaaatcatcttcagcagctttcggatccggtaaactaaaacaagaatattcccattgaacttgaaattatcagaaatcatgtcga 34389950  T
Q  360 tcaaactctttgaatcactttccactataagatgagaataat 401  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  34389951 tcaaaatctttgaatcactttccactataagatgagagtaat 34389992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 84 - 401
Target Start/End: Original strand, 36894286 - 36894603
Alignment:
Q  84 aaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctcacaaggaggagaatccagcacaag 183  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||    
T  36894286 aaaattaagaagctaatcgaacattcctaggcatgcaagctccggataaatcatcaaaaaggattcttttgacctcacaaggaggagactccaacactag 36894385  T
Q  184 aaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatc 283  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36894386 aaaattaaaatgatctgtataaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggttgagttgaacattccaactcatc 36894485  T
Q  284 ttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttcca 383  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  36894486 ttcagcaacttccggatccggtaaactaaaacaggaatattcacattgaacttgaaattattagaaatcatgtcgatcaaaatctttgaatcactttcca 36894585  T
Q  384 ctataagatgagaataat 401  Q
    ||||||||||||| ||||    
T  36894586 ctataagatgagagtaat 36894603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 204 - 394
Target Start/End: Original strand, 47597580 - 47597770
Alignment:
Q  204 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacg 303  Q
    ||||||| |||||||| ||||||||  |||| |||||||||| | ||||||||||| ||| ||| |||| ||||  |||  |||||||||||| |||||     
T  47597580 aaatgctaaaattagcaagccaatcggcacttctatttcctttatgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgataca 47597679  T
Q  304 gtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
     | |||||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  47597680 atgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 47597770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 4228382 - 4228307
Alignment:
Q  202 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaa 277  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||    
T  4228382 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaa 4228307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 261
Target Start/End: Complemental strand, 1217402 - 1217216
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctcacaaggaggagaatc 174  Q
    |||||||| |||| |||||| |||| || || ||||||||||||||||||||||| | ||||||||| |  |  || |  | ||||| ||||||||  ||    
T  1217402 aaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagccccggaaatatcatcaaacaaaagactctgaagctcactaggaggagtctc 1217303  T
Q  175 cagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggt 261  Q
    ||| | | ||||||  |||  ||| || |||||||| |||||||| ||||||||  |||| || || ||||| ||||||||||||||    
T  1217302 cagaatatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgccaagtatgggt 1217216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 44307790 - 44307715
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccg 127  Q
    |||| ||||||||||||||| ||||   ||| |||| |||||| |||| ||||| |||||||||||||||||||||    
T  44307790 ggtacaaaagagggcaaagcacaaagaaaaagaaaactaagaaattaaacgaacgttcctaggcatgcaagccccg 44307715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 261
Target Start/End: Original strand, 28945210 - 28945418
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattctt 151  Q
    |||| |||||||||||||||| ||| ||||| |||| |||||| |||| || || |||||||||||| ||| |||| | | ||||||||| |  |  |||    
T  28945210 ggtacaaaagagggcaaagcctaaa-ggaaagaaaactaagaaattaaacggacgttcctaggcatgtaagtcccgaaaatatcatcaaacaaaagactt 28945308  T
Q  152 ttgacctcacaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgcc 251  Q
    |  | ||||| ||||||||  || || | | ||||||  |||  ||| || |||||||| |||||||| ||||||||  |||| || || ||||| ||||    
T  28945309 tgaagctcactaggaggagtctctagaatatgaaaatctaaaaaatccgtcgaaatgctgaaattagcaagccaatctgcacttctgttgccttcccgcc 28945408  T
Q  252 aagtatgggt 261  Q
    ||||||||||    
T  28945409 aagtatgggt 28945418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 861334 - 861270
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaag 144  Q
    |||||||| ||||||||||  |||||| | |||| ||||||||||||||| | ||||||||||||    
T  861334 aaacaaaactaagaagttagccgaacacttctagacatgcaagccccggaaatatcatcaaaaag 861270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 394
Target Start/End: Original strand, 43270874 - 43270970
Alignment:
Q  298 gatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
    |||||| | |||||||| ||| ||||| ||||| | ||||||||| ||| |||||||||| |||||  |||| || |||||||  ||||||||||||    
T  43270874 gatacgatgaactaaaatagggatatttccattaagcttgaaattgtcaaaaatcatgtcgatcaatatcttagagtcacttttaactataagatga 43270970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 44307639 - 44307581
Alignment:
Q  203 gaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggt 261  Q
    |||||||| |||||||| ||||||||  |||| || || ||||||||||||||||||||    
T  44307639 gaaatgctgaaattagcaagccaatctgcacttctgttgccttcacgccaagtatgggt 44307581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 1369413 - 1369357
Alignment:
Q  339 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 395  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  1369413 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 1369357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 28945496 - 28945552
Alignment:
Q  339 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 395  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  28945496 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 28945552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 60 - 401
Target Start/End: Original strand, 18258985 - 18259326
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctc 159  Q
    ||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18258985 agagggcaaagcccaaaagaaaataaaatttagaagctaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaatgattcttttgacctc 18259084  T
Q  160 acaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgg 259  Q
    |||||||||||| |||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||    
T  18259085 acaaggaggagactccaacactagaaaattaaaatgatctgtcgaaatgcttaaattagcgagccaatcagcactcatatttccttcgcgccaggtatgg 18259184  T
Q  260 gtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaa 359  Q
     ||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| |    
T  18259185 ttgagttgaacatttcaacttatcttcagcagcttccggatccggtaaactaaaacaagaatattcccattgaatttggaattatcagaaatcatgtcga 18259284  T
Q  360 tcaaactctttgaatcactttccactataagatgagaataat 401  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  18259285 tcaaaatctttgaatcactttccactataagatgagagtaat 18259326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 52 - 401
Target Start/End: Complemental strand, 22540571 - 22540222
Alignment:
Q  52 ggtataaaagagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattctt 151  Q
    ||||||| |||||||||||||||||   |||||||||||||||| |||||||||||| ||| |||||||||| ||||||||||||||||||| |||||||    
T  22540571 ggtataagagagggcaaagcccaaacaaaaacaaaattaagaagctaatcgaacatttctatgcatgcaagctccggataaatcatcaaaaatgattctt 22540472  T
Q  152 ttgacctcacaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgcc 251  Q
    |||||||||||||||||||| | || ||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  22540471 ttgacctcacaaggaggagacttcaacactagaaaatttaaatgatctgtagaaatgcttaaattagcgagtcaatcaacactcctatttcctttacgcc 22540372  T
Q  252 aagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaat 351  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  22540371 aagtatggttgagttgaacattccaactcatcttcagcagcttccggatccagtaaactaaaacaggaatatttccatcgaacttgaaattatcagaaat 22540272  T
Q  352 catgtcaatcaaactctttgaatcactttccactataagatgagaataat 401  Q
    || ||| |||||| |||||||||||||||| |||||||||||||| ||||    
T  22540271 cacgtcgatcaaaatctttgaatcactttcaactataagatgagagtaat 22540222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 80 - 401
Target Start/End: Original strand, 34080607 - 34080925
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttgacctcacaaggaggagaatccagca 179  Q
    |||||||||||| ||  |||||||||||| |||||||||||||| ||  |||||||||||||||||||| ||| |||||||| |||||   | |||| ||    
T  34080607 aaacaaaattaaaaaactaatcgaacatttctaggcatgcaagctccaaataaatcatcaaaaaggattttttggacctcactaggag---actccaaca 34080703  T
Q  180 caagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaact 279  Q
    | | ||||||||| |||| |||| ||||| |||||||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||     
T  34080704 ctataaaattaaagtgatatgtaaaaatgtttaaattagcaagccaatcaacactcatgtttccttcacgccaagtatggttgagttgaacattccaacc 34080803  T
Q  280 catcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactt 379  Q
    |||||||||||||||| |||| |||| |||||||||| |||||||| ||||||||||||| |||||||||||||| || |||||| ||||| ||||||||    
T  34080804 catcttcagcagcttctggatccggtgaactaaaacaagaatattcgcattgaacttgaatttatcagaaatcatatccatcaaaatctttaaatcactt 34080903  T
Q  380 tccactataagatgagaataat 401  Q
    ||||||||||||||||| ||||    
T  34080904 tccactataagatgagagtaat 34080925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 202 - 394
Target Start/End: Original strand, 4560304 - 4560496
Alignment:
Q  202 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 301  Q
    ||||||||| |||||||| || |||||| |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  4560304 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 4560403  T
Q  302 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
    || | |||||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  4560404 cgatgaactaaaataggcatattcccattaaacttgaacttttcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 4560496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 202 - 394
Target Start/End: Complemental strand, 18934264 - 18934072
Alignment:
Q  202 agaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggata 301  Q
    ||||||||| |||||||| ||||||||  |||| |||||||||||||||||||||||| ||| ||| |||| ||||  |||  |||||||||||| ||||    
T  18934264 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcctgata 18934165  T
Q  302 cggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
    || | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| |  ||||||||||| |||||||||    
T  18934164 cgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgggtcactttccacaataagatga 18934072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 394
Target Start/End: Complemental strand, 18883590 - 18883400
Alignment:
Q  204 aaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaactcatcttcagcagcttccggatacg 303  Q
    ||||||| |||||||| ||||||||  ||   ||||||||||| |||||||||||| ||| ||| ||||  |||  |||  |||| ||||||| |||||     
T  18883590 aaatgctaaaattagcaagccaatcggcatatctatttccttcgcgccaagtatggttgatttgcacatgtcaatccattctcagtagcttcctgataca 18883491  T
Q  304 gtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 394  Q
     | |||||||| ||| ||||||||||| ||||| || || || ||||||||||| |||||  ||||||| ||| |||||||||||||||||    
T  18883490 atgaactaaaatagggatattcccattaaacttaaacttgtccgaaatcatgtcgatcaatatctttgagtcattttccactataagatga 18883400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 13236789 - 13236721
Alignment:
Q  84 aaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttt 152  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||    
T  13236789 aaaattaagaagttaatcgaacattcctaagcatgcaagcctcggataaaacatcaaaaatgattcttt 13236721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 397
Target Start/End: Complemental strand, 32216927 - 32216808
Alignment:
Q  278 ctcatcttcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcac 377  Q
    ||||||||||| ||||||  |||||| || ||||||| ||| |||||| ||||||| | ||||||  ||| ||||||||  |||||| ||||||| |  |    
T  32216927 ctcatcttcagaagcttctagatacgctagactaaaatagggatattctcattgaaatggaaattgccaggaatcatgttgatcaaaatctttgagttgc 32216828  T
Q  378 tttccactataagatgagaa 397  Q
    | |||||||| |||||||||    
T  32216827 tctccactattagatgagaa 32216808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 7531191 - 7531127
Alignment:
Q  80 aaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaag 144  Q
    |||||||| ||| ||| ||  |||||| |||||||||||||||||||||| || |||||||||||    
T  7531191 aaacaaaactaaaaagctatccgaacactcctaggcatgcaagccccggaaaagtcatcaaaaag 7531127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Original strand, 239835 - 239901
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||| |||| |||||| |||| || || ||||||||||||||||| ||||| | |||||||||    
T  239835 aaaggaaagaaaactaagaaattaaacggacgttcctaggcatgcaagctccggaaatatcatcaaa 239901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 141
Target Start/End: Complemental strand, 14025178 - 14025112
Alignment:
Q  75 aaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||| |||| |||||| |||| || || ||| ||||||||||||||||||| | |||||||||    
T  14025178 aaaggaaagaaaactaagaaattaaacggacgttcttaggcatgcaagccccggaaatatcatcaaa 14025112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 18934362 - 18934325
Alignment:
Q  104 acattcctaggcatgcaagccccggataaatcatcaaa 141  Q
    |||||||||||||||||||||||||| | |||||||||    
T  18934362 acattcctaggcatgcaagccccggaaatatcatcaaa 18934325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Complemental strand, 14024914 - 14024858
Alignment:
Q  339 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 395  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  14024914 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 14024858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 372
Target Start/End: Complemental strand, 32786093 - 32785942
Alignment:
Q  223 ccaatcaacactcctatttccttcacgccaagtatgggtgagttgaacattccaac--tcatcttcagcagcttccggatacggtaaactaaaacaggaa 320  Q
    ||||||||||||  ||||||||||||  ||||||||  ||| ||| |||| ||||   |||||||||  |||||| ||||| | | || ||||| | | |    
T  32786093 ccaatcaacacttttatttccttcacaacaagtatgattgatttgcacatgccaatattcatcttcataagcttctggataggttgaaataaaataagga 32785994  T
Q  321 tattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttga 372  Q
    || |||  ||||| | |||||| ||||||||||||||| ||||| |||||||    
T  32785993 tagtcctgttgaaatagaaattgtcagaaatcatgtcagtcaaattctttga 32785942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 394
Target Start/End: Original strand, 1223033 - 1223142
Alignment:
Q  285 tcagcagcttccggatacggtaaactaaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccac 384  Q
    |||||||||||| |||||| | |||||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || |||||||||||    
T  1223033 tcagcagcttcctgatacgatgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac 1223132  T
Q  385 tataagatga 394  Q
     |||||||||    
T  1223133 aataagatga 1223142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 253
Target Start/End: Original strand, 1222827 - 1223019
Alignment:
Q  60 agagggcaaagcccaaaaggaaacaaaattaagaagttaatcgaacattcctaggcatgcaagccccggataaatcatcaaaaaggattcttttg-acct 158  Q
    |||||||||||||||| || ||| ||| | | ||| |||| || |||||||||||||||||||||||||| | ||||||||| | ||  |||| | | ||    
T  1222827 agagggcaaagcccaagagaaaagaaact-acgaaattaaccggacattcctaggcatgcaagccccggaaatatcatcaaacatga-gctttcgaagct 1222924  T
Q  159 cacaaggaggagaatccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaa 253  Q
    ||  ||||||||  ||||  | ||  ||||| |||||||    ||||||||| |||||||| ||||||||  |||| ||||||||||||||||||    
T  1222925 caataggaggagtctccaaaataatcaaattcaaatgattcacagaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaa 1223019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 20679026 - 20679071
Alignment:
Q  101 cgaacattcctaggcatgcaagccccggataaatcatcaaaaagga 146  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||    
T  20679026 cgaacattcctaggcatgcaagccccggaaatatcatcaaatagga 20679071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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