View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_7 (Length: 389)
Name: NF15565_low_7
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 30188246 - 30188061
Alignment:
| Q |
20 |
tgaactatcttccattattctttaccattcattaggtgagggaacaaaatgatccttctttgcatgtaatccaaagcgagatgttactataaaatgggag |
119 |
Q |
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| T |
30188246 |
tgaactatcttccattattctttaccattcattaggtgagggaacaaaatgatccttctttgcatgtaatccaaagcgagatgttactataaaatgggag |
30188147 |
T |
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| Q |
120 |
tatttgacttaaaaatcaaactgaaagactctcatgcattgttttactttagatagataccatgtgtcattgtcaaagatacatgg |
205 |
Q |
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| T |
30188146 |
tatttgacttaaaaatcaaactgaaagactctcatgcattgttttactttagatagataccatgtgtcattgtcaaagatacatgg |
30188061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 268 - 380
Target Start/End: Complemental strand, 30187998 - 30187886
Alignment:
| Q |
268 |
aacagaactgttgcattgtaaaccaaataatagaagcaatacatgttagtatatcaatcaaaatgcgagtgatagcttgatattacaccagtgacaaccc |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30187998 |
aacagaactgttgcattgtaaaccaaataatagaagcaatacatgttagtatatcaatcaaaatgcgagtgatagcttgatattacaccagtgacaaccc |
30187899 |
T |
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| Q |
368 |
aatggagaattat |
380 |
Q |
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| T |
30187898 |
aatggagaattat |
30187886 |
T |
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