View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15565_low_8 (Length: 374)

Name: NF15565_low_8
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15565_low_8
NF15565_low_8
[»] chr2 (1 HSPs)
chr2 (13-349)||(14916355-14916699)
[»] chr4 (6 HSPs)
chr4 (16-167)||(48515818-48515970)
chr4 (175-217)||(48515743-48515785)
chr4 (177-213)||(12701267-12701303)
chr4 (258-337)||(48515626-48515704)
chr4 (315-349)||(12875799-12875833)
chr4 (320-349)||(19907749-19907778)
[»] chr1 (5 HSPs)
chr1 (16-147)||(6788644-6788775)
chr1 (166-217)||(19075245-19075297)
chr1 (166-217)||(19123135-19123187)
chr1 (288-329)||(19075138-19075179)
chr1 (288-329)||(19123028-19123069)
[»] chr6 (1 HSPs)
chr6 (166-349)||(21785149-21785328)
[»] chr7 (1 HSPs)
chr7 (320-349)||(12802742-12802771)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 14916355 - 14916699
Alignment:
Q  13 atgaagaaatttgactggtccattgacaaaagaattagtaagagagagaga----ttaactaatcatttgacgaaatgattaatcagagagggctttgaa 108  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    ||||||||||||||||||||||||||| |||||||||||||||||    
T  14916355 atgaagaaatttgactggtccattgacgaaagaattagtaagagagagagagagattaactaatcatttgacgaaatgattagtcagagagggctttgaa 14916454  T
Q  109 aacctcagaaagaatgagactagtgccaagaataattttctcatatgagggtaacccaaataggtt-aaagggtaataacaacttatatagagat---gt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||   ||    
T  14916455 aacctcagaaagaatgagactagtgccaagaataattttctcatatgagggtaacccaaataggtttaaagggtaataacaacttatatagagatcatgt 14916554  T
Q  205 ggatcatgctaaggataaataaatttaaagtctcaatcgtatatttagagcaagatatcacgtagtgtgtgaaaatgttgaattaaatttcttactgagt 304  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14916555 ggatcatgctaaagataaataaatttaaagtctcaatcatatatttagagcaagatatcacgtagtgtgtgaaaatgttgaattaaatttcttaatgagt 14916654  T
Q  305 catataccccatatggagtggagtacatagctacatgagtactct 349  Q
     ||||| ||||||||||||||||||| ||||||||||||||||||    
T  14916655 tatatatcccatatggagtggagtacgtagctacatgagtactct 14916699  T

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Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 167
Target Start/End: Complemental strand, 48515970 - 48515818
Alignment:
Q  16 aagaaatttgactggtccattgacaaaagaattagtaagagagagagattaactaatcatttgacgaaatgattaatcagagagggctttg-aaaacctc 114  Q
    |||||| ||||||  ||| || || |||| |||||||||||||| ||||| |||||| ||||||||||||||||| |||||||||| |||| |||||||     
T  48515970 aagaaacttgactaatcctttaaccaaaggattagtaagagagatagattgactaattatttgacgaaatgattagtcagagagggttttgaaaaacctt 48515871  T
Q  115 agaaagaatgagactagtgccaagaataattttctcatatgagggtaacccaa 167  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  48515870 agaaagaatgagactagtgtcaatagtaattttctcatatgagggtaacccaa 48515818  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 48515785 - 48515743
Alignment:
Q  175 aaagggtaataacaacttatatagagatgtggatcatgctaag 217  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  48515785 aaagggtaataacaacttatatagaaatgtggatcatgctaag 48515743  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 213
Target Start/End: Original strand, 12701267 - 12701303
Alignment:
Q  177 agggtaataacaacttatatagagatgtggatcatgc 213  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12701267 agggtaataacaacttatatagagatgtgaatcatgc 12701303  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 48515704 - 48515626
Alignment:
Q  258 gatatcacgtagtgtgtgaaaatgttgaattaaatttcttactgagtcatataccccatatggagtggagtacatagcta 337  Q
    ||||||| ||||||  || ||| |||||||||| ||||||| |||||  ||||| |||||||||||||||||| ||||||    
T  48515704 gatatcatgtagtgaatggaaaggttgaattaa-tttcttaatgagttctatactccatatggagtggagtacgtagcta 48515626  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 12875833 - 12875799
Alignment:
Q  315 atatggagtggagtacatagctacatgagtactct 349  Q
    ||||||||||||||||||||||||||| |||||||    
T  12875833 atatggagtggagtacatagctacatgcgtactct 12875799  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 349
Target Start/End: Complemental strand, 19907778 - 19907749
Alignment:
Q  320 gagtggagtacatagctacatgagtactct 349  Q
    ||||||||||||||||||||||||||||||    
T  19907778 gagtggagtacatagctacatgagtactct 19907749  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 6788644 - 6788775
Alignment:
Q  16 aagaaatttgactggtccattgacaaaagaattagtaagagagagagattaactaatcatttgacgaaatgattaatcagagagggctttgaaaacctca 115  Q
    ||||||||||| |||| | ||||| |||  |||||||||||||| |||||   | || |||||||||||||| ||   ||||||||||||| ||||||||    
T  6788644 aagaaatttgattggtactttgacgaaaagattagtaagagagaaagattggttgattatttgacgaaatgaatagatagagagggctttgtaaacctca 6788743  T
Q  116 gaaagaatgagactagtgccaagaataatttt 147  Q
     ||||||||| |||||||  || |||||||||    
T  6788744 aaaagaatgaaactagtgtgaataataatttt 6788775  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 19075297 - 19075245
Alignment:
Q  166 aaataggtt-aaagggtaataacaacttatatagagatgtggatcatgctaag 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  19075297 aaataggttcaaagggtaataacaacttatatagagatgtggaacatgctaag 19075245  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 19123187 - 19123135
Alignment:
Q  166 aaataggtt-aaagggtaataacaacttatatagagatgtggatcatgctaag 217  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  19123187 aaataggttcaaagggtaataacaacttatatagagatgtggaacatgctaag 19123135  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 19075179 - 19075138
Alignment:
Q  288 taaatttcttactgagtcatataccccatatggagtggagta 329  Q
    ||||||||||| ||||| |||||| |||||||||||||||||    
T  19075179 taaatttcttaatgagttatatactccatatggagtggagta 19075138  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 329
Target Start/End: Complemental strand, 19123069 - 19123028
Alignment:
Q  288 taaatttcttactgagtcatataccccatatggagtggagta 329  Q
    ||||||||||| ||||| |||||| |||||||||||||||||    
T  19123069 taaatttcttaatgagttatatactccatatggagtggagta 19123028  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 166 - 349
Target Start/End: Original strand, 21785149 - 21785328
Alignment:
Q  166 aaataggtt-aaagggtaataacaacttatatagagatgtggatcatgctaaggataaataaatttaaagtctcaatcgta--tatttagagcaagatat 262  Q
    ||||||||| ||||||||||||||||||||||| |||||| || ||||||||| ||       ||| | |||||| || ||  | ||| | |||||||||    
T  21785149 aaataggttcaaagggtaataacaacttatataaagatgtagaacatgctaagaatt------ttttatgtctcattcatagctttttggggcaagatat 21785242  T
Q  263 cacgtagtgtgtgaaaatgttgaattaaatttcttactgagtcatataccccatatggagtggagtacatagctacatgagtactct 349  Q
     | ||||||  |||||| ||||||| |||||||||| ||||| |||||| |||||||||||||||||  ||||||||| | ||||||    
T  21785243 aatgtagtgaatgaaaaggttgaat-aaatttcttaatgagttatatactccatatggagtggagtatgtagctacatcaatactct 21785328  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 349
Target Start/End: Complemental strand, 12802771 - 12802742
Alignment:
Q  320 gagtggagtacatagctacatgagtactct 349  Q
    ||||||||||||||||||||||||||||||    
T  12802771 gagtggagtacatagctacatgagtactct 12802742  T

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