View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15565_low_9 (Length: 363)
Name: NF15565_low_9
Description: NF15565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15565_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 110 - 351
Target Start/End: Original strand, 18762509 - 18762753
Alignment:
| Q |
110 |
tacaagtgatgcctttttagctatagtgt----aatgtatcatttgaaaattaattaacatnnnnnnnggttgaagaaacttataattacctgcagcaat |
205 |
Q |
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| T |
18762509 |
tacaagtgatgcctttttagctatagtgtgtgtaatgtatcatttgaaaattaattaacataaaaaa-ggttgaagaaacttataattacctgcagcaat |
18762607 |
T |
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| Q |
206 |
ggtggctaggatgacaaagaaataaaagaaatttgagatgtggtttgccattagtaaacaattcttttctttgctaagttaatttcttttggcttggtag |
305 |
Q |
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| T |
18762608 |
ggtggctaggatgacaaagaaataaaagaaatttgagatgtggtttgccattagtaaacaattcttttctttgctaagttaatttcttttggcttgctag |
18762707 |
T |
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| Q |
306 |
tgttttgaggacacagtgatggtgtatttatatgccaaattatttt |
351 |
Q |
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| T |
18762708 |
tgttttgaggacacagtgatggtgtatttatatgccaaattatttt |
18762753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 143 - 350
Target Start/End: Original strand, 18773336 - 18773542
Alignment:
| Q |
143 |
tatcatttgaaaattaattaacatnnnnnnnggttgaagaaacttataattacctgcagcaatggtggctaggatgacaaagaaataaaagaaatttgag |
242 |
Q |
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| T |
18773336 |
tatcatttgaaaattaattaacataaaaaa-ggttgaagaaacttataattacctgcagcaatggtggttaggatgacaaagaaataaaagaaatttgag |
18773434 |
T |
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| Q |
243 |
atgtggtttgccattagtaaacaattcttttctttgctaagttaatttcttttggcttggtagtgttttgaggacacagtgatggtgtatttatatgcca |
342 |
Q |
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| T |
18773435 |
atgtggtttgccattagtaaacaattcttttctttgctaagttaatttcttttggcttggtagtgttttgaggacacagtgatggtgtatttatatgcca |
18773534 |
T |
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| Q |
343 |
aattattt |
350 |
Q |
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| T |
18773535 |
aattattt |
18773542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 18762418 - 18762458
Alignment:
| Q |
47 |
acattccatttggcttgtgagggaaaataatgaaacttgta |
87 |
Q |
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| T |
18762418 |
acattccatttggcttgtgagggaaaataatgaaacttgta |
18762458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 18790423 - 18790488
Alignment:
| Q |
192 |
ttacctgcagcaatggtggctaggatgacaaagaaataaaagaaatttgagatgtggtttgccatt |
257 |
Q |
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| T |
18790423 |
ttacctgcggcaatggtagctagaatgacaaggatattaaacaagtttgagaagtggtttgccatt |
18790488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 201 - 272
Target Start/End: Complemental strand, 19646948 - 19646877
Alignment:
| Q |
201 |
gcaatggtggctaggatgacaaagaaataaaagaaatttgagatgtggtttgccattagtaaacaattcttt |
272 |
Q |
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| T |
19646948 |
gcaatggtggctaggatgacaaagaaataaaagaaatttgagatgtggtttgccattagtaaacaattcttt |
19646877 |
T |
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