View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15566_high_4 (Length: 322)
Name: NF15566_high_4
Description: NF15566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15566_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 21493593 - 21493291
Alignment:
| Q |
1 |
tcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtcttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21493593 |
tcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtcttt |
21493494 |
T |
|
| Q |
101 |
tctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttat--tatcacaatttccatgcatgcatagat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| || |
|
|
| T |
21493493 |
tctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatatcacaatttccatgcatgcatacat |
21493394 |
T |
|
| Q |
199 |
aacgtatacgtagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaa |
298 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21493393 |
aacg--tacatagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaa |
21493296 |
T |
|
| Q |
299 |
ccaac |
303 |
Q |
| |
|
||||| |
|
|
| T |
21493295 |
ccaac |
21493291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 131 - 303
Target Start/End: Complemental strand, 21483309 - 21483139
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggc----cataatagttattatcacaatttccatgcatgcatagataacgtatacgtagaagaccaatcatgcc |
226 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||| |||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
21483309 |
tcacaatctagtatggtcttttgtttagctagccatactagttattatcacaatctccatgcatgcatacataacgta------gaagtccaatcatgcc |
21483216 |
T |
|
| Q |
227 |
aaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaac |
303 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| |||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
21483215 |
aaggtagaagtgaaagaccacgaatgaatgttttgcaattggcggccgccagatgtaactgttgcagataaaccaac |
21483139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 303
Target Start/End: Complemental strand, 21489662 - 21489484
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggccataatagttattat----cacaatttccatgcatgcat----agataacgtatacgtagaagaccaatca |
222 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||| |||||| ||||||||||||| | |||||||| ||||| |||||||||| |
|
|
| T |
21489662 |
tcacaatctaatatggacttttgtttagccatactagttattatatatcacaatctccatgcatgcatgcatacataacgta--cgtaggagaccaatca |
21489565 |
T |
|
| Q |
223 |
tgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaac |
303 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||| |||||||||| || ||||| || | |||| |||||||| |
|
|
| T |
21489564 |
tgccaaggttgaagtgaaagaccatgaatgaatctgttgcaattggcggccgacagctgtaactgttccagaaaaaccaac |
21489484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 21483509 - 21483432
Alignment:
| Q |
103 |
tttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483509 |
tttagacatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatcacaat |
21483432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21483638 - 21483520
Alignment:
| Q |
1 |
tcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtcttt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| || | || |||||||||||||| |
|
|
| T |
21483638 |
tcatgacttggttatttaggtaacatta------ggttaagcatggactttatttatagaaaaaccgaaacatatacatgatt---caagtatggtcttt |
21483548 |
T |
|
| Q |
101 |
tctttagccatactagttatcatcacaa |
128 |
Q |
| |
|
| |||||||||||||||||| ||||||| |
|
|
| T |
21483547 |
tgtttagccatactagttattatcacaa |
21483520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 21489892 - 21489775
Alignment:
| Q |
1 |
tcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtcttt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||| ||||||||| || | ||||||||||||||||| |
|
|
| T |
21489892 |
tcatgacttagctatttaggtaacatta------gtttaagcatgga-tttatttatagataaattgaaacatatac---atggttcaagtatggtcttt |
21489803 |
T |
|
| Q |
101 |
tctttagccatactagttatcatcacaa |
128 |
Q |
| |
|
||||||||||| |||||| ||||||| |
|
|
| T |
21489802 |
ggtttagccataccagttattatcacaa |
21489775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 21483472 - 21483389
Alignment:
| Q |
89 |
agtatggtcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| ||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483472 |
agtatggacttttgtttagccatactagttattatcacaa--------tctaatatggacttttgtttagccatactagttattatcacaat |
21483389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 21483352 - 21483303
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483352 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 21483395 - 21483346
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483395 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 21489705 - 21489656
Alignment:
| Q |
131 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
|||||||||||||||| || |||||| | |||| |||||||||||||||| |
|
|
| T |
21489705 |
tcacaatctagtatggtctattgtttaggcatactagttattatcacaat |
21489656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 21483559 - 21483519
Alignment:
| Q |
140 |
agtatggacttttgtttggccataatagttattatcacaat |
180 |
Q |
| |
|
||||||| ||||||||| |||||| |||||||||||||||| |
|
|
| T |
21483559 |
agtatggtcttttgtttagccatactagttattatcacaat |
21483519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University