View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15566_high_5 (Length: 317)
Name: NF15566_high_5
Description: NF15566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15566_high_5 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 317
Target Start/End: Complemental strand, 48753927 - 48753619
Alignment:
| Q |
9 |
atgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaaggggttgat |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48753927 |
atgatggtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaagaggttgat |
48753828 |
T |
|
| Q |
109 |
caccacttacctttgaataaaccttgatcatcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753827 |
caccacttacctttgaataaaccttgatcatcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagc |
48753728 |
T |
|
| Q |
209 |
tctagcagggttttcaatcatcaacaacactgcttcaatagcatctttgatataaagaaaagtcctctgagactcaccaccatccacaagcttcaacggc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48753727 |
tctagcagggttttcaatcatcaacaacactgcttcaatagcatctttgatataaagataagtcctctgagactcaccaccatccacaagcttcaacggc |
48753628 |
T |
|
| Q |
309 |
tctcctcga |
317 |
Q |
| |
|
||||||||| |
|
|
| T |
48753627 |
tctcctcga |
48753619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 9 - 313
Target Start/End: Complemental strand, 49052562 - 49052258
Alignment:
| Q |
9 |
atgattgtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaaggggttgat |
108 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
49052562 |
atgatggtcatatcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaattgtaggagtttcaagaggttgat |
49052463 |
T |
|
| Q |
109 |
caccacttacctttgaataaaccttgatcatcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49052462 |
caccacttacctttgaataaaccttgatcatcatttcagctagctcccgaactgtaacctcgttgttcgggttacccacattaaatatcttgccattagc |
49052363 |
T |
|
| Q |
209 |
tctagcagggttttcaatcatcaacaacactgcttcaatagcatctttgatataaagaaaagtcctctgagactcaccaccatccacaagcttcaacggc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
49052362 |
tctagcagggttttcaatcatcaacaacactgcctcaatagcatctttgatataaagaaaagtcctctgagactcaccaccatctacaagcttcaacggc |
49052263 |
T |
|
| Q |
309 |
tctcc |
313 |
Q |
| |
|
||||| |
|
|
| T |
49052262 |
tctcc |
49052258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 20488377 - 20488494
Alignment:
| Q |
15 |
gtcatgtcaggaattctcttgtcactatcatcatatccctcaccgtaaaattctttcgagctcacatcaactgtaggtgtttcaaggggttgatcaccac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | |||||| |||| |
|
|
| T |
20488377 |
gtcatgtcaggaattctcttgtcactatcatcatatccctcaccataaaattctttcgagctcacatcaatcgtaggtgtttcaggtggttgagttccac |
20488476 |
T |
|
| Q |
115 |
ttacctttgaataaacct |
132 |
Q |
| |
|
| ||||||||||| |||| |
|
|
| T |
20488477 |
taacctttgaatagacct |
20488494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 20488577 - 20488671
Alignment:
| Q |
129 |
accttgatcatcatttcagccagctcccgaaccgtaacctcattgttcgggttacccacattaaatatcttcccattagctctagcagggttttc |
223 |
Q |
| |
|
|||| ||||||||||||||| |||| || ||| |||||||||||||| ||||||||||||||||| || | ||||| ||||| ||||||||||| |
|
|
| T |
20488577 |
acctggatcatcatttcagcgagctgcctaactgtaacctcattgtttgggttacccacattaaaaatatggccattggctctggcagggttttc |
20488671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 315
Target Start/End: Original strand, 20488756 - 20488848
Alignment:
| Q |
223 |
caatcatcaacaacactgcttcaatagcatctttgatataaagaaaagtcctctgagactcaccaccatccacaagcttcaacggctctcctc |
315 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||| |||| ||| || ||||| || |||||||||||||||||||| | |||||||||| |
|
|
| T |
20488756 |
caatcatcaataagacagcttcaatagcatctttgatgtaaacaaatgttctctgggattcaccaccatccacaagcttgaggggctctcctc |
20488848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University