View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15566_high_6 (Length: 300)

Name: NF15566_high_6
Description: NF15566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15566_high_6
NF15566_high_6
[»] chr3 (8 HSPs)
chr3 (135-261)||(29438248-29438374)
chr3 (135-268)||(43615679-43615812)
chr3 (19-67)||(43616161-43616209)
chr3 (23-65)||(42914513-42914555)
chr3 (69-107)||(29438417-29438455)
chr3 (67-107)||(43615840-43615880)
chr3 (193-255)||(11985585-11985647)
chr3 (23-67)||(29313164-29313208)
[»] chr7 (9 HSPs)
chr7 (144-256)||(19362399-19362511)
chr7 (135-255)||(44598444-44598563)
chr7 (140-256)||(47967521-47967636)
chr7 (181-256)||(9698331-9698406)
chr7 (183-255)||(19113527-19113598)
chr7 (66-107)||(31642754-31642795)
chr7 (67-107)||(44598579-44598619)
chr7 (67-104)||(9698211-9698248)
chr7 (24-67)||(23705386-23705429)
[»] chr1 (7 HSPs)
chr1 (148-256)||(52453923-52454031)
chr1 (141-256)||(170872-170987)
chr1 (145-256)||(4808345-4808456)
chr1 (181-256)||(28702407-28702478)
chr1 (67-104)||(171039-171076)
chr1 (67-107)||(52453836-52453876)
chr1 (19-52)||(26673786-26673819)
[»] chr6 (3 HSPs)
chr6 (158-256)||(14533478-14533576)
chr6 (67-107)||(14533644-14533684)
chr6 (181-241)||(20613247-20613307)
[»] chr8 (3 HSPs)
chr8 (183-255)||(27084472-27084544)
chr8 (23-67)||(33285098-33285142)
chr8 (67-107)||(25430942-25430982)
[»] chr2 (6 HSPs)
chr2 (149-256)||(17623420-17623527)
chr2 (19-67)||(32532765-32532813)
chr2 (141-233)||(14735690-14735782)
chr2 (174-241)||(5887872-5887939)
chr2 (174-236)||(17303255-17303317)
chr2 (19-67)||(12287972-12288020)
[»] chr4 (6 HSPs)
chr4 (181-256)||(13564708-13564783)
chr4 (67-104)||(13564588-13564625)
chr4 (131-236)||(26494421-26494525)
chr4 (146-234)||(31523046-31523134)
chr4 (142-208)||(46852108-46852174)
chr4 (188-241)||(29096115-29096168)
[»] chr5 (6 HSPs)
chr5 (23-67)||(3631947-3631991)
chr5 (23-67)||(4870217-4870261)
chr5 (146-241)||(15974121-15974216)
chr5 (25-67)||(13106135-13106177)
chr5 (181-241)||(18768380-18768440)
chr5 (25-67)||(13036145-13036187)
[»] scaffold0060 (1 HSPs)
scaffold0060 (181-255)||(35661-35735)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 135 - 261
Target Start/End: Complemental strand, 29438374 - 29438248
Alignment:
Q  135 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 234  Q
    |||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438374 ttcatggtaccccctttccactgcaccagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 29438275  T
Q  235 ctacccccaaagagatccgcccttgcc 261  Q
    || ||||||||||||||||||| ||||    
T  29438274 ctgcccccaaagagatccgcccctgcc 29438248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 135 - 268
Target Start/End: Complemental strand, 43615812 - 43615679
Alignment:
Q  135 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 234  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||    
T  43615812 ttcatggtaccccctttccactgcagcaactcaattcagattgatgttatactcctaatatagtatataaggaaactttaggggataacatgacacctgc 43615713  T
Q  235 ctacccccaaagagatccgcccttgccctcccgg 268  Q
    || |||||||| ||| ||| || |||||||||||    
T  43615712 ctgcccccaaaaagacccgtccatgccctcccgg 43615679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 43616209 - 43616161
Alignment:
Q  19 ttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616209 ttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 43616161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 42914513 - 42914555
Alignment:
Q  23 catgtttatgcaactatcattagaaatatcaacgatctcctta 65  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  42914513 catgtttatgcaactatcattagaaatatcaatgatctcctta 42914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 29438455 - 29438417
Alignment:
Q  69 ttttaaatacgatatgcaataatagaagattaaacaagt 107  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  29438455 ttttaaatacaatatgcaataatagaagattaaacaagt 29438417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 43615880 - 43615840
Alignment:
Q  67 ttttttaaatacgatatgcaataatagaagattaaacaagt 107  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  43615880 ttttttaaatacgatattgaataatagaagattaaacaagt 43615840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 11985585 - 11985647
Alignment:
Q  193 tatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 255  Q
    |||||||||||||  ||  |||||||||||| |||| |||||| ||| |||||||||||||||    
T  11985585 tatagtatataagttaatcttgggggataccgtggctcctgccgaccaccaaagagatccgcc 11985647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 29313164 - 29313208
Alignment:
Q  23 catgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    ||||||||||| |||||||| |||||||| || ||||||||||||    
T  29313164 catgtttatgccactatcatcagaaatattaaggatctccttaat 29313208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 144 - 256
Target Start/End: Complemental strand, 19362511 - 19362399
Alignment:
Q  144 ccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccccca 243  Q
    ||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  19362511 ccccctttccactgcagcagctcaattcagattgatattatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctgccccca 19362412  T
Q  244 aagagatccgccc 256  Q
    |||||||||||||    
T  19362411 aagagatccgccc 19362399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 135 - 255
Target Start/End: Complemental strand, 44598563 - 44598444
Alignment:
Q  135 ttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 234  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44598563 ttcacggtaccccctttccactgcagcagctcaattcaaattaatattatactcctaatatagtatataaggaaactttgggggataccatgacacctgc 44598464  T
Q  235 ctacccccaaagagatccgcc 255  Q
    ||| |||||||||||| ||||    
T  44598463 cta-ccccaaagagatacgcc 44598444  T

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Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 47967521 - 47967636
Alignment:
Q  140 ggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacc 239  Q
    |||||||||||||||||  |||| ||||||| | ||| ||||||||||||||||||| |||||||||||| |||| ||||||||||||||| || || ||    
T  47967521 ggtaccccctttccactggagcagctcaatttagatttatgttatactcctaatataatatataaggaaattttgagggataccatggcacttg-ctgcc 47967619  T
Q  240 cccaaagagatccgccc 256  Q
    |||||| ||||||||||    
T  47967620 cccaaatagatccgccc 47967636  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 9698331 - 9698406
Alignment:
Q  181 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 256  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  9698331 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 9698406  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 19113527 - 19113598
Alignment:
Q  183 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 255  Q
    |||| ||||||| |||||||||||||| ||||||| || ||||| |||| |||||||||||||||||||||||    
T  19113527 atacacctaatacagtatataaggaaaatttgggg-atgccatgacaccagcctacccccaaagagatccgcc 19113598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 31642795 - 31642754
Alignment:
Q  66 attttttaaatacgatatgcaataatagaagattaaacaagt 107  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  31642795 attttttaaatacaatatgcaataatagaagattaaacaagt 31642754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 44598619 - 44598579
Alignment:
Q  67 ttttttaaatacgatatgcaataatagaagattaaacaagt 107  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  44598619 ttttttaaatacaatatgcaataatagaagattaaacaagt 44598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 9698211 - 9698248
Alignment:
Q  67 ttttttaaatacgatatgcaataatagaagattaaaca 104  Q
    |||||||||||| |||||||||||||||||||||||||    
T  9698211 ttttttaaatacaatatgcaataatagaagattaaaca 9698248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 23705429 - 23705386
Alignment:
Q  24 atgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    |||||||||||||||||| |||||||||||| |||||| |||||    
T  23705429 atgtttatgcaactatcaatagaaatatcaatgatctctttaat 23705386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 52453923 - 52454031
Alignment:
Q  148 ctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaaga 247  Q
    ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||    
T  52453923 ctttccactgcagcagctcaattcaaattgatattatactcctaatatagtatataaggaaactttgggggataccatgacacttgcctgcccccaaaga 52454022  T
Q  248 gatccgccc 256  Q
    |||||||||    
T  52454023 gatccgccc 52454031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 141 - 256
Target Start/End: Complemental strand, 170987 - 170872
Alignment:
Q  141 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctaccc 240  Q
    ||||||||| |||||| || ||||||||||| | ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||    
T  170987 gtaccccctctccactgcaacaactcaattctagttgttattatactcctaatatactatataaggaaactttgggggatatcatggcacctgccttccc 170888  T
Q  241 ccaaagagatccgccc 256  Q
    |||||||||| |||||    
T  170887 ccaaagagattcgccc 170872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 145 - 256
Target Start/End: Complemental strand, 4808456 - 4808345
Alignment:
Q  145 cccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaa 244  Q
    ||||||||||||||||||| ||||||| | ||| |  |||||| ||||||| ||||||||||||||||||| |||||||| | ||||||||| ||| |||    
T  4808456 cccctttccactacagcaaatcaattctagttgttaatatacttctaatatggtatataaggaaactttggaggataccacgacacctgcctgccctcaa 4808357  T
Q  245 agagatccgccc 256  Q
    |||||| |||||    
T  4808356 agagattcgccc 4808345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 28702407 - 28702478
Alignment:
Q  181 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 256  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||    |||||||||||||||||||    
T  28702407 ttatactcttaatatagtatataaggaaactttgagggataccatgtcacctg----cccccaaagagatccgccc 28702478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Complemental strand, 171076 - 171039
Alignment:
Q  67 ttttttaaatacgatatgcaataatagaagattaaaca 104  Q
    |||||||||||| |||||||||||||||||||||||||    
T  171076 ttttttaaatacaatatgcaataatagaagattaaaca 171039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 52453836 - 52453876
Alignment:
Q  67 ttttttaaatacgatatgcaataatagaagattaaacaagt 107  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  52453836 ttttttaaatacaatatgctataatagaagattaaacaagt 52453876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 26673786 - 26673819
Alignment:
Q  19 ttggcatgtttatgcaactatcattagaaatatc 52  Q
    |||||||||||||||||||| |||||||||||||    
T  26673786 ttggcatgtttatgcaactaacattagaaatatc 26673819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 158 - 256
Target Start/End: Complemental strand, 14533576 - 14533478
Alignment:
Q  158 cagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 256  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14533576 cagcagctcaatttatattgatgttatactcctaatatagtatatcaggaaactttgggggataccatggcacctgcctgcccccaaagagatccgccc 14533478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 14533684 - 14533644
Alignment:
Q  67 ttttttaaatacgatatgcaataatagaagattaaacaagt 107  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  14533684 ttttttaaatacaatatgcaacaatagaagattaaacaagt 14533644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 20613247 - 20613307
Alignment:
Q  181 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 241  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  20613247 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacctacctgcccc 20613307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 27084472 - 27084544
Alignment:
Q  183 atactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 255  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  27084472 atacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagatccgcc 27084544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 33285098 - 33285142
Alignment:
Q  23 catgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  33285098 catgtttatgcaactatcattagaaatatcaacgatctgcttaat 33285142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 25430982 - 25430942
Alignment:
Q  67 ttttttaaatacgatatgcaataatagaagattaaacaagt 107  Q
    |||||| ||||| ||||||||||||||||||||||||||||    
T  25430982 tttttttaatacaatatgcaataatagaagattaaacaagt 25430942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 17623420 - 17623527
Alignment:
Q  149 tttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagag 248  Q
    |||||||| ||||| ||||||||   ||| | ||||||| |||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||    
T  17623420 tttccactgcagcagctcaattctggttgttattatacttctaatatagtatataaggaaactttgggggataccatgacacatgtctgcccccaaagag 17623519  T
Q  249 atccgccc 256  Q
    ||||||||    
T  17623520 atccgccc 17623527  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 32532813 - 32532765
Alignment:
Q  19 ttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32532813 ttggcatgtttatgcaactatcattagaaatatcaatgatctccttaat 32532765  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 14735690 - 14735782
Alignment:
Q  141 gtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctg 233  Q
    ||||||| ||||||| ||| ||||  ||||| ||||||| | |||| |||||||||||||||||| ||| | ||||| || ||||||| ||||    
T  14735690 gtaccccatttccacaacaacaaccaaattctaattgatataatacacctaatatagtatataagaaaaatctggggaatgccatggcccctg 14735782  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 5887939 - 5887872
Alignment:
Q  174 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 241  Q
    |||||| |||||| |||||| |||||||||||| || | |||||||| ||||||||||| ||| ||||    
T  5887939 attgatattatacacctaatgtagtatataagggaaatctgggggatgccatggcacctacctgcccc 5887872  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 17303255 - 17303317
Alignment:
Q  174 attgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcct 236  Q
    |||||| |||||| ||||||||||||||||||| || | |||||||| ||||  |||||||||    
T  17303255 attgatattatacacctaatatagtatataagggaaatctgggggatgccataacacctgcct 17303317  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 12288020 - 12287972
Alignment:
Q  19 ttggcatgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    ||||||||||||||| ||||||||||||||| |  | ||||||||||||    
T  12288020 ttggcatgtttatgccactatcattagaaatgttgaagatctccttaat 12287972  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 13564708 - 13564783
Alignment:
Q  181 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgccc 256  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  13564708 ttatactcttaatatagtatataaggaaactttggaggataccatggcacctaccgtcccccaaagagatccgccc 13564783  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 13564588 - 13564625
Alignment:
Q  67 ttttttaaatacgatatgcaataatagaagattaaaca 104  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13564588 ttttttaaatacaatatgcaataatagaagattaaaca 13564625  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 236
Target Start/End: Complemental strand, 26494525 - 26494421
Alignment:
Q  131 ccagttcatggtaccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcac 230  Q
    ||||||||||| ||||| || ||||| || ||||| ||||   |||||  |||||| ||||||||||||||||||| || | ||||||||  ||||||||    
T  26494525 ccagttcatggcacccc-ttaccactgcaacaactaaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgtcatggcac 26494427  T
Q  231 ctgcct 236  Q
    ||||||    
T  26494426 ctgcct 26494421  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 234
Target Start/End: Complemental strand, 31523134 - 31523046
Alignment:
Q  146 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgc 234  Q
    ||||| ||||| ||| | || ||||| | ||| ||| |||| ||||||| | ||||||||||||||||||||||| ||||| |||||||    
T  31523134 cccttaccactgcagtagctgaattctagttgttgtaatacacctaatacaatatataaggaaactttgggggatgccatgacacctgc 31523046  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 46852108 - 46852174
Alignment:
Q  142 taccccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaa 208  Q
    |||| |||||||||| |||||||| ||||| ||||| | | |||| ||||||||| |||||||||||    
T  46852108 taccgcctttccactgcagcaactgaattctaattgttataatacacctaatataatatataaggaa 46852174  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 29096168 - 29096115
Alignment:
Q  188 cctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 241  Q
    |||||||||||| |||||| || | |||||||| ||||||||||||||| ||||    
T  29096168 cctaatatagtaaataagggaaatctgggggatgccatggcacctgcctgcccc 29096115  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 3631991 - 3631947
Alignment:
Q  23 catgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  3631991 catgtttatgcaactatcattagaaacatcaacgatctccttaat 3631947  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 4870261 - 4870217
Alignment:
Q  23 catgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    
T  4870261 catgtttatgcaactatcattagaaatatcaacaatctccttaat 4870217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 241
Target Start/End: Original strand, 15974121 - 15974216
Alignment:
Q  146 ccctttccactacagcaactcaattcaaattgatgttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 241  Q
    ||||| |||||||| ||||| ||||   |||||  | |||| |||||||||||||||||||||| | | |||||| ||||||||||||||| ||||    
T  15974121 cccttaccactacaacaactaaattgttattgaaatcatacacctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgcccc 15974216  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 13106177 - 13106135
Alignment:
Q  25 tgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  13106177 tgtttatgcaattatcattagaaatattaacgatctccttaat 13106135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 18768380 - 18768440
Alignment:
Q  181 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccc 241  Q
    |||||| ||||||||||||||||||| ||   |||||||| ||||||||||||||| ||||    
T  18768380 ttatacacctaatatagtatataagggaaacctgggggatgccatggcacctgcctgcccc 18768440  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 13036187 - 13036145
Alignment:
Q  25 tgtttatgcaactatcattagaaatatcaacgatctccttaat 67  Q
    ||||||| |||||||||||| |||||| |||||||||||||||    
T  13036187 tgtttatacaactatcattaaaaatattaacgatctccttaat 13036145  T

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Target: scaffold0060 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 35735 - 35661
Alignment:
Q  181 ttatactcctaatatagtatataaggaaactttgggggataccatggcacctgcctacccccaaagagatccgcc 255  Q
    |||||| ||||||||||||||||||| || | |||||||| ||||||||| || || ||||  || |||||||||    
T  35735 ttatacacctaatatagtatataagggaaatctgggggatgccatggcacttggctgccccttaaaagatccgcc 35661  T

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