View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15566_high_7 (Length: 258)
Name: NF15566_high_7
Description: NF15566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15566_high_7 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 161247 - 161451
Alignment:
| Q |
14 |
agacattaagaaaaggcacacgtcacctagtagcattgcaaactcaagatggccattggcctgctcaaattgcaggtcctctgttttacatgcctccctt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
161247 |
agacattaagaaaaggcacacgtcacctagtagcattgcaaactcaagatggccattggcctgctcaaattgcaggtcctctgttttacatgcctccctt |
161346 |
T |
|
| Q |
114 |
ggtgagtatacttactaaatatatttaatataatattaaaggttaataatatttttgttttagactaaaaatcgtgaaacacgtcatcaactctctccat |
213 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
161347 |
ggtgagtatacttactaaatata-ttaata------taaaggttaataatatttttgtt---ccctaaaaatcgtgaaacacgtcatcaactcactccat |
161436 |
T |
|
| Q |
214 |
aataattctcaaacc |
228 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
161437 |
aataattctcaaacc |
161451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 101907 - 101988
Alignment:
| Q |
40 |
ctagtagcattgcaaactcaagatggccattggcctgctcaaattgcaggtcctctgttttacatgcctcccttggtgagta |
121 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
101907 |
ctagcagcattgcaaaccagtgatggccattggcctgctcaaattgcaggtcctctatttttcatgcctcccttggtgagta |
101988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 94035 - 93936
Alignment:
| Q |
22 |
agaaaaggcacacgtcacctagtagcattgcaaactcaagatggccattggcctgctcaaattgcaggtcctctgttttacatgcctcccttggtgagta |
121 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||| | ||||| |||||||||| |
|
|
| T |
94035 |
agaagaggcacacatcacctagctgcattgcaaaccagtgatggccattggcctgctcaaattgcagggcctctattttacgttcctcctttggtgagta |
93936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 13051240 - 13051341
Alignment:
| Q |
15 |
gacattaagaaaaggcacacgtcacctagtagcattgcaaactcaagatggccattggcctgctcaaattgcaggtcctctgttttacatgcctcccttg |
114 |
Q |
| |
|
||||||||||| ||| | | |||||||| |||||||||||| ||||| |||||||||||||||||||| |||||| |||||| ||| ||||| ||| |
|
|
| T |
13051240 |
gacattaagaaggggcgcgcatcacctagcagcattgcaaaccagtgatggtcattggcctgctcaaattgctggtcctttgtttttcattcctcctttg |
13051339 |
T |
|
| Q |
115 |
gt |
116 |
Q |
| |
|
|| |
|
|
| T |
13051340 |
gt |
13051341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 12138683 - 12138598
Alignment:
| Q |
36 |
tcacctagtagcattgcaaactcaagatggccattggcctgctcaaattgcaggtcctctgttttacatgcctcccttggtgagta |
121 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||| ||||||||| |||||| | | |||||||||||||||| |
|
|
| T |
12138683 |
tcacctagcggcattgcagactagcgatggccattggcctgctcaaaatgcaggtccaatgtttttccttcctcccttggtgagta |
12138598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University