View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15566_low_2 (Length: 784)
Name: NF15566_low_2
Description: NF15566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15566_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 447 - 768
Target Start/End: Original strand, 44515318 - 44515648
Alignment:
| Q |
447 |
ctagacttggtgtttggttgaattaaacctgttctagcttgctattgttgctcatgaccannnnnnnnaacaggggtctgttctatttttggtgttgttt |
546 |
Q |
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| T |
44515318 |
ctagacttggtgtttagttgaattaaacctgttctagcttgctattgttgcttatgaccattttttttaacaggggtctgttctatttttggtgttgttt |
44515417 |
T |
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| Q |
547 |
cttgtgttgaaagcgtgatcaattgcgcccttaggcctgaagatccaattgagctttctacacaatacgcagtaaaccgttttgcacgtcaacggttgga |
646 |
Q |
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| T |
44515418 |
cttgtgttgaaagcgtgatcaattgcgcccttaggcctgaagatccaattgagctttctacacaatacgtagtaaaccgttttgcacgtcaacggttgga |
44515517 |
T |
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| Q |
647 |
gggaatgtgtaaaacgagtgaaggtaatataca---------cattgaggatgtggttggtggctttacttgtgaggaagtacttcgtactataagagat |
737 |
Q |
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| T |
44515518 |
gggaatgtgtaaaatgagtgaaggtaatatacacattgagtgcattgaggatgtggttggtggctttacttgcgaggaagtacttcgtactataagagat |
44515617 |
T |
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| Q |
738 |
aatggcattccgactgaaaaggccttcaaat |
768 |
Q |
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| T |
44515618 |
agtggcattccgactgaaaaggccttcaaat |
44515648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 194 - 389
Target Start/End: Original strand, 44515056 - 44515260
Alignment:
| Q |
194 |
ttatcatatattccttgaacctagttacattctgtatttaatctaagggtatgagtatttggggcccattgttcttaatgtagttgtttggaaaatatat |
293 |
Q |
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| T |
44515056 |
ttatcatatattccttgaacctagttacattctgtatttaatctaagggtatgagtatttgggacccattgttcttaatgtagttgtttggaaaatatat |
44515155 |
T |
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| Q |
294 |
ttaatttaagattaggtcaattttgaggaaaaaattatttaaggaggg---------gaggatgtaacaccccacattactatctctataaataattttg |
384 |
Q |
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| T |
44515156 |
ttaatttaagattaggtcaattttgaggacaaaattatttaagggggggggggacccggggatgtaacaccccacattactatctctataaataattttg |
44515255 |
T |
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| Q |
385 |
atagg |
389 |
Q |
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||||| |
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| T |
44515256 |
atagg |
44515260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 44509645 - 44509679
Alignment:
| Q |
355 |
cccacattactatctctataaataattttgatagg |
389 |
Q |
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| T |
44509645 |
cccacattactatctctataaataactttgatagg |
44509679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 2e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 30 - 197
Target Start/End: Original strand, 1140404 - 1140570
Alignment:
| Q |
30 |
ccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaatacatgtgaaagttagtttgagtcatccttgcaatcttcttctaaaaccagt |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
1140404 |
ccatctctctctagtgtgaatgtttcttttttaatatcaaaagagaaattcatgtgaaagttagtttgagtcatccttgcaatcttctcataaaatcagt |
1140503 |
T |
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| Q |
130 |
tcatttggttgtagtccctgcatccaatcaatgacaaccaaatagtttagaaagaaagaaacagttat |
197 |
Q |
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| T |
1140504 |
tcatttggttgtagtccctgcatccaatcaatgacaaccaaatag-ttataaagaaagaaacatttat |
1140570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 389
Target Start/End: Original strand, 26505297 - 26505341
Alignment:
| Q |
345 |
gatgtaacaccccacattactatctctataaataattttgatagg |
389 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
26505297 |
gatgtaacatcccatattactatctctataaataattttgatagg |
26505341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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