View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15566_low_9 (Length: 214)
Name: NF15566_low_9
Description: NF15566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15566_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 40587989 - 40588187
Alignment:
| Q |
1 |
ggaataaatcacatttaactgtgagtgtaagtgtcataacactactaaatggaagcttttatgcatatttgcattgaagaaaagaaacctcaaaacttac |
100 |
Q |
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| T |
40587989 |
ggaataaatcacatttaactgtgagtgtaagtgtcataacactactaaatggaagcttttatgcatatttgcattgaagaaaagaaacctcaaaacttac |
40588088 |
T |
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| Q |
101 |
acaacatttcagccttcaacaccaatcatacatagagatgtgaaaacttcaaatgtacttgatcacaatctcactgcaaagttttgggattttagagct |
199 |
Q |
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| T |
40588089 |
acaacatttcagccttcaacaccaatcatacatagagatgtgaaaacttcaaatgtacttgatcacaatctcactgcaaagttttgggattttagagct |
40588187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 177
Target Start/End: Original strand, 40568589 - 40568655
Alignment:
| Q |
114 |
cttcaacaccaatcatacatagagatgtgaaaacttcaaatgta---cttgatcacaatctcactgc |
177 |
Q |
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| T |
40568589 |
cttcaacaccaatcatacatagagatgtgaaatctacaaatatactcctagatcacaatctcactgc |
40568655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 40573190 - 40573260
Alignment:
| Q |
114 |
cttcaacaccaatcatacatagagatgtgaaaacttcaaatgta---cttgatcacaatctcactgcaaag |
181 |
Q |
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| T |
40573190 |
cttcgacaccaatcatacatagagatgtgaaatcttcaaatatactcctagatcaaaatctcactgcaaag |
40573260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 40579647 - 40579717
Alignment:
| Q |
114 |
cttcaacaccaatcatacatagagatgtgaaaacttcaaatgta---cttgatcacaatctcactgcaaag |
181 |
Q |
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| T |
40579647 |
cttctacaccaatcatacatagagatgtgaaatcttcaaatatactcctagatcaaaatctcactgcaaag |
40579717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 2015142 - 2015108
Alignment:
| Q |
119 |
acaccaatcatacatagagatgtgaaaacttcaaa |
153 |
Q |
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| T |
2015142 |
acaccaatcatacatagagatgtgaaatcttcaaa |
2015108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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