View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_high_19 (Length: 330)
Name: NF15567_high_19
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 20460571 - 20460877
Alignment:
| Q |
7 |
ggagcagagaatgtaggacaaaacacaagtttgtatccaaaaccatgtttcacgattttaaacttaccatctatgatatgcttacctatatagtcttcaa |
106 |
Q |
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| T |
20460571 |
ggagcagtgaatgtaggacaaaacacaagtttgtatccaaaaccatgtttcacgattttaaacttaccatctatgatatgcttacctatatagtcttcaa |
20460670 |
T |
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| Q |
107 |
taccaccaataccaacccatggtctagggaaatcatcttcaatcagcaaccacttcgaggattcggcacactctggcttttctggaaatacaatatccac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20460671 |
taccaccaataccaacccatggtctagggaaatcatcttcaatcagcaaccacttcgaggattcggcacactctggcttttctggaaatacaatatccac |
20460770 |
T |
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| Q |
207 |
tcttgacgtgtctgtagatatcaaatcaataaaaacttcagcgtcagtgctaaattttaccgggagaccgttgacgacctcagaataatcttgaagtaca |
306 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20460771 |
tcttgacgtgtctgtagatatcaaatcaataaaaatttcagcgtcagtgctaaattttaccgggagaccgttgacgacctcagaataatcttgaagtaca |
20460870 |
T |
|
| Q |
307 |
gtaagtg |
313 |
Q |
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||||||| |
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| T |
20460871 |
gtaagtg |
20460877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 130
Target Start/End: Original strand, 24222006 - 24222114
Alignment:
| Q |
22 |
ggacaaaacacaagtttgtatccaaaaccatgtttcacgattttaaacttaccatctatgatatgcttacctatatagtcttcaataccaccaataccaa |
121 |
Q |
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||||| |||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||||||| || |||||| ||||||||||||||| |
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| T |
24222006 |
ggacagaacacaagcttgtatccaaaaccatgtttctgaattttaaagaaaccatttatgatatgcttaccttcattatcttcagtaccaccaataccaa |
24222105 |
T |
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| Q |
122 |
cccatggtc |
130 |
Q |
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||||||||| |
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| T |
24222106 |
cccatggtc |
24222114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 257 - 313
Target Start/End: Original strand, 24222241 - 24222297
Alignment:
| Q |
257 |
taaattttaccgggagaccgttgacgacctcagaataatcttgaagtacagtaagtg |
313 |
Q |
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|||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
24222241 |
taaactttacaggcagaccattgacaacctcagaataatcttgaagtacagtaagtg |
24222297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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