View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_high_2 (Length: 630)
Name: NF15567_high_2
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 20 - 618
Target Start/End: Original strand, 27794654 - 27795252
Alignment:
| Q |
20 |
aagtgcaatcaaaagcatgtgaaaacaaaataaagcattatttacttggacttgttatgcttcttaaaaattattttgcaattgtatatacagtaaaaat |
119 |
Q |
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| T |
27794654 |
aagtgcaatcaaaagcatgtgaaaacaaaataaagcatt---tacttgcacttgttatgcttcttacaaattattttgcaattgtatatacagtaaaaat |
27794750 |
T |
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| Q |
120 |
ttatatttcttgatattttaatcaa-ccctagaaaaatatttaatcaattaattttttgaccaaatttaataaattaattagtaagtatataccaataca |
218 |
Q |
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| T |
27794751 |
ttatatttcgtgatattttaatcaaaccctagaaaaatatttaatcaattaattttttgaccaaatttaataaattaattagtaattatataccaataca |
27794850 |
T |
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| Q |
219 |
cagataaaatctggctaaataacttatatcacacaaatatttttcaaaataaaaaatttatattacacaaccagttcctaatttcctcaaattatgatct |
318 |
Q |
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| T |
27794851 |
cagataaaatctggctaattaacttatatcacacaaatatttttcaaaataaaaaacttatattacacaaccagttcctaatttcctgaaattatgatct |
27794950 |
T |
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| Q |
319 |
agctgtgtgtgtaattgcaacagaatttttctaatatgaagctattatatgtataaaataaaacgtatttatattatacaaaactattacaaatctctac |
418 |
Q |
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| T |
27794951 |
agctgtgtgtgtaattgcaacataatttttctaatatgaagctattatatgtataaaataaaacgtatttatattatacaaaactattaaaaatctctac |
27795050 |
T |
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| Q |
419 |
ctaagagttaagtatgctatcattttcttgtatacatactccatgtttgttgaa--nnnnnnnnncttgaatttgttatttttagttgaatgaataatta |
516 |
Q |
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| T |
27795051 |
ctaagagttaagtatgctatcattttcttgtatacatactccatggttgttgaaatattttttttcttgaatttgttatttttagttgaatgaataatca |
27795150 |
T |
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| Q |
517 |
caataattaagtatatgatcattaattttacctgatcttcctcggagattttcagctatggcgttccaattatgaggtccatagctttccaccaactccc |
616 |
Q |
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| T |
27795151 |
caataattaagtatatgatcattaattttacctgatcttcctcggagattttcagctatggcgttccaattatgaggtccatagctttccaccaactccc |
27795250 |
T |
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