View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_high_21 (Length: 320)
Name: NF15567_high_21
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 33769694 - 33769394
Alignment:
| Q |
1 |
gtgcttacttcacatacatatcatgcatgatcagatattgcgtctaataccagtaggaaaaggaaacaaccataatagaatctatttttgtactcattac |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33769694 |
gtgcttacttcacatatatatcatgcatgatcagatattgcgtctaataccagtaggaaaaggaaacaaccataatagaatctatttttgtactccttac |
33769595 |
T |
|
| Q |
101 |
taacttatgatgtatttacttcacatatagttctggttttacaacatgattcctgatatatgtatatatgggaataatgagattcatttggttccaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33769594 |
taacttatgatgtatttacttcacatatagttctggttttacaacatgattcctgatatatgtatatatgggaataatgagattcatttggttccaattc |
33769495 |
T |
|
| Q |
201 |
tcctcttctcattcgaactatgattgtattcaaaatttcccaatcacatacaaaacaaaatcgccaggatttgcaatgacataacgctgattctgataga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33769494 |
tcctcttctcattcgaactatgattgtattcaaaatttcccaatcacatacaaaacaaaatcgccaggatttgcaatgacataatgctgattctgataga |
33769395 |
T |
|
| Q |
301 |
a |
301 |
Q |
| |
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| |
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| T |
33769394 |
a |
33769394 |
T |
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