View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_high_24 (Length: 305)
Name: NF15567_high_24
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 18662305 - 18662035
Alignment:
| Q |
19 |
ccctaaagacaatttttagaaaaaccctaatactactcctaactaccaaaaaatatataacacggacgaccccacactccttattagtccttagtgcaag |
118 |
Q |
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| T |
18662305 |
ccctaaaaacactttttagcaaaaccctaatactactcctaactaccaaaaaatatataacatagacgaccccatactccttattagtccttagtgcaag |
18662206 |
T |
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| Q |
119 |
atatggacgaccccatactccttattactccttagtgctagacctccaaatcccaccacaaagactcgcgtcaagcattgaaagtttcaaacacgacatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18662205 |
atatggacgaccccatactccttattactccttagtgctagacctccaaatcccaccacaaagactcgcgtcaagcattgaaagtttcaaacacgacatt |
18662106 |
T |
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| Q |
219 |
acaaatggacatcaccttcaacaaataaagcatacactcatacacactatatatacttatacagttacatt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
18662105 |
acaaatggacatcaccttcaacaaataaagcatacactcatacacactatatatacttacatagttacatt |
18662035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 21127803 - 21127704
Alignment:
| Q |
119 |
atatggacgaccccatactccttattactccttagtgcta-gacctccaaatcccaccacaaagactcgcgtcaagcattgaaagtttcaaacacgacat |
217 |
Q |
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||||||||||||||||||||||||||| ||||| |||||| ||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21127803 |
atatggacgaccccatactccttattagtcctt-gtgctaagacttccaattcccaccacaaagactcgcgtcaaccattgaaagtttcaaacacgacat |
21127705 |
T |
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