View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_high_26 (Length: 289)
Name: NF15567_high_26
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 34936008 - 34935755
Alignment:
| Q |
18 |
atgccaggactaagtctgaattacaatcccatgtaagttttgtctttctcgaaatgccaagccaacaaatgaatgcttttcgttcaagtttcataatttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34936008 |
atgccaggactaagtctgaattacaatcccatgtaagttctgtttttctcgaaatgccaagccaacaaatgaatgcttttcgttcaagtttcataatttt |
34935909 |
T |
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| Q |
118 |
agtttcagttctttaatattattaattaacctccaaacctgcagatggaaatgctggacttaatcaattcttgtgaggctgcatataaggccgatgttcg |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34935908 |
agtttcagtcctttaatattattaattaacctccaaacctgcagatggaaatgctggacttaatcaattcttgtgaggctgcatataaggccgatgttcg |
34935809 |
T |
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| Q |
218 |
taagcagaaagctgccgaagctcgaacccagaagcacaaagctgctgaacttcc |
271 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
34935808 |
taagcagaaagctgccgaagctcgaaaccagaagcacaaagctgctgagcttcc |
34935755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 34930492 - 34930239
Alignment:
| Q |
18 |
atgccaggactaagtctgaattacaatcccatgtaagttttgtctttctcgaaatgccaagccaacaaatgaatgcttttcgttcaagtttcataatttt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34930492 |
atgccaggactaagtctgaattacaatcccatgtaagttctgtttttctcgaaatgccaagccaacaaatgaatgcttttcgttcaagtttcataatttt |
34930393 |
T |
|
| Q |
118 |
agtttcagttctttaatattattaattaacctccaaacctgcagatggaaatgctggacttaatcaattcttgtgaggctgcatataaggccgatgttcg |
217 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
34930392 |
agtttcagtcctttaatattattaattaacctccaaacctgcagatggaaatgctggacttaatcaattcttgtgaggcttcatataaggctgatgttcg |
34930293 |
T |
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| Q |
218 |
taagcagaaagctgccgaagctcgaacccagaagcacaaagctgctgaacttcc |
271 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34930292 |
taagcagaaagctgccgaagctcgaaaccagaagcacaaagctgctgaacttcc |
34930239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 34926052 - 34925799
Alignment:
| Q |
18 |
atgccaggactaagtctgaattacaatcccatgtaagttttgtctttctcgaaatgccaagccaacaaatgaatgcttttcgttcaagtttcataatttt |
117 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34926052 |
atgccaggactaagtctgaattacaatcccatgtaagttctgtttttctcgaaatgccaagccaacaaatgaatgcttttcgttcaagtttcataatttt |
34925953 |
T |
|
| Q |
118 |
agtttcagttctttaatattattaattaacctccaaacctgcagatggaaatgctggacttaatcaattcttgtgaggctgcatataaggccgatgttcg |
217 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34925952 |
agtttcagtcctttaatattattaattaacctccaaacctgcagatggaaatgctggacttaatcaattcttgtgaggctgcatataaggctgatgttcg |
34925853 |
T |
|
| Q |
218 |
taagcagaaagctgccgaagctcgaacccagaagcacaaagctgctgaacttcc |
271 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |
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|
| T |
34925852 |
taagcagaaagctgccgaagctcgaaaccataagcacaaagctgatgaacttcc |
34925799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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