View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_high_37 (Length: 240)
Name: NF15567_high_37
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_high_37 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3014514 - 3014753
Alignment:
| Q |
1 |
tgcttaattctttctattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccat |
100 |
Q |
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| T |
3014514 |
tgcttaattctttctattcatgtttttgtatttcatatttcagcggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccat |
3014613 |
T |
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| Q |
101 |
gattcccaaatttacctacaatcatgaatatgtgcaggttagccttttttccactagttattattatagttcaatgtttctttgtcacagatctcataac |
200 |
Q |
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| T |
3014614 |
gattcccaaatttacctacaatcatgaatatgtgcaggttagccttttttcaactagttattattatagttcaatgtttcttcgtcgcagatctcataac |
3014713 |
T |
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| Q |
201 |
atatcttgttattgcggagtcttcgacctagtcgtttatc |
240 |
Q |
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| T |
3014714 |
atatcttgttattgcagagtcttcgacctagtcgtttatc |
3014753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 183042 - 183119
Alignment:
| Q |
17 |
ttcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaa |
94 |
Q |
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| T |
183042 |
ttcatgttttagtatttgatatttcaatggtgaaggaatcccagacatgttatttctattgtttcagtggacccaaaa |
183119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 591338 - 591250
Alignment:
| Q |
15 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgat |
103 |
Q |
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| T |
591338 |
tattgatgttctagtatttgatatttcagtggtgaaggaatcacggacatgttatttctattgtttggttggacccaaaagaccatgat |
591250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 40672172 - 40672025
Alignment:
| Q |
29 |
tatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatgattcccaaatttacctacaatcatgaa |
128 |
Q |
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| T |
40672172 |
tatttcatatttcagtggtgaaggaatcccggatatgttatttctattgtttaagtggatccaatacaccattattcacaagtttacctacagtcaacaa |
40672073 |
T |
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| Q |
129 |
tatgtgcaggttagccttttttccactagttattattatagttcaatg |
176 |
Q |
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| T |
40672072 |
gctgtgcaggttagcccttttttccccacttattattattattcaatg |
40672025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 44606401 - 44606488
Alignment:
| Q |
15 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
102 |
Q |
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| T |
44606401 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttaagtggacccaaaagaccatga |
44606488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 44627892 - 44627979
Alignment:
| Q |
15 |
tattcatgtttttgtatttcatatttcagtggtgaaggaatcccggacatgttatttctattgtttaagtggactcaaaaaaccatga |
102 |
Q |
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| T |
44627892 |
tattgatgttttagtatttaatatttcagtggtgaaggaatcccggatatgttattactattagttcagtggacccaaaagaccatga |
44627979 |
T |
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