View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15567_high_38 (Length: 232)

Name: NF15567_high_38
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15567_high_38
NF15567_high_38
[»] chr3 (36 HSPs)
chr3 (1-232)||(49296162-49296392)
chr3 (1-228)||(53836012-53836236)
chr3 (68-232)||(8598705-8598871)
chr3 (127-232)||(22489434-22489539)
chr3 (166-232)||(33693302-33693368)
chr3 (169-232)||(21386476-21386539)
chr3 (4-91)||(22489324-22489410)
chr3 (166-232)||(26107822-26107888)
chr3 (166-232)||(48379643-48379709)
chr3 (166-232)||(49458404-49458470)
chr3 (169-226)||(42736359-42736416)
chr3 (166-226)||(20833396-20833456)
chr3 (149-232)||(4962703-4962786)
chr3 (166-232)||(50902950-50903016)
chr3 (166-226)||(34483739-34483799)
chr3 (169-232)||(39038583-39038646)
chr3 (168-231)||(44905498-44905561)
chr3 (166-225)||(52810858-52810917)
chr3 (166-232)||(7437560-7437626)
chr3 (166-232)||(16155210-16155276)
chr3 (168-222)||(37832628-37832682)
chr3 (171-232)||(51737333-51737394)
chr3 (166-226)||(31645902-31645962)
chr3 (166-226)||(36673793-36673853)
chr3 (166-226)||(40897630-40897690)
chr3 (181-232)||(9818568-9818619)
chr3 (169-232)||(18750136-18750199)
chr3 (181-232)||(49293849-49293900)
chr3 (166-228)||(50761741-50761803)
chr3 (166-222)||(23753030-23753086)
chr3 (166-226)||(37455346-37455406)
chr3 (169-232)||(52617615-52617679)
chr3 (181-232)||(27261439-27261490)
chr3 (148-232)||(7665637-7665720)
chr3 (169-232)||(17946721-17946780)
chr3 (181-217)||(29690692-29690728)
[»] chr1 (45 HSPs)
chr1 (1-232)||(41353488-41353719)
chr1 (1-228)||(11578923-11579150)
chr1 (1-232)||(26757682-26757913)
chr1 (26-232)||(8147384-8147589)
chr1 (26-232)||(1243154-1243360)
chr1 (68-232)||(9192091-9192256)
chr1 (68-232)||(51106959-51107124)
chr1 (124-232)||(4005134-4005243)
chr1 (166-232)||(47371563-47371629)
chr1 (148-232)||(5209338-5209422)
chr1 (166-232)||(45273061-45273127)
chr1 (166-232)||(49453048-49453114)
chr1 (166-232)||(5494736-5494802)
chr1 (171-232)||(3583549-3583610)
chr1 (148-232)||(42304470-42304554)
chr1 (169-232)||(35177201-35177264)
chr1 (166-226)||(6313076-6313136)
chr1 (166-230)||(8140871-8140935)
chr1 (166-230)||(15834672-15834736)
chr1 (166-226)||(25612592-25612652)
chr1 (166-226)||(29396072-29396132)
chr1 (166-226)||(51702095-51702155)
chr1 (166-232)||(46328480-46328546)
chr1 (166-228)||(48966479-48966541)
chr1 (166-226)||(18798952-18799012)
chr1 (146-226)||(25253566-25253646)
chr1 (166-226)||(29219621-29219681)
chr1 (166-226)||(38535784-38535844)
chr1 (166-226)||(38558002-38558062)
chr1 (166-226)||(48177080-48177140)
chr1 (171-226)||(15927372-15927427)
chr1 (148-207)||(28403916-28403975)
chr1 (3-45)||(1243105-1243147)
chr1 (181-230)||(34019188-34019237)
chr1 (1-45)||(8147596-8147640)
chr1 (148-232)||(32760069-32760153)
chr1 (181-232)||(7798567-7798618)
chr1 (181-232)||(33886863-33886914)
chr1 (181-232)||(33957336-33957387)
chr1 (166-200)||(28387093-28387127)
chr1 (166-232)||(49231501-49231567)
chr1 (183-232)||(1108419-1108468)
chr1 (166-207)||(25830887-25830928)
chr1 (186-231)||(49236974-49237019)
chr1 (166-198)||(9322155-9322187)
[»] chr8 (28 HSPs)
chr8 (1-232)||(19484261-19484491)
chr8 (148-232)||(8029811-8029895)
chr8 (166-232)||(26856600-26856666)
chr8 (166-232)||(31625803-31625869)
chr8 (169-232)||(10294982-10295045)
chr8 (166-232)||(12522422-12522488)
chr8 (166-230)||(27915567-27915631)
chr8 (166-230)||(27961986-27962050)
chr8 (166-226)||(43166316-43166376)
chr8 (166-226)||(44725431-44725491)
chr8 (166-228)||(39467158-39467220)
chr8 (166-226)||(14781772-14781832)
chr8 (166-226)||(18305616-18305676)
chr8 (170-226)||(26620338-26620394)
chr8 (166-226)||(43308148-43308208)
chr8 (171-232)||(17234760-17234820)
chr8 (181-232)||(28317075-28317126)
chr8 (170-207)||(42423261-42423298)
chr8 (166-226)||(16364207-16364267)
chr8 (166-226)||(18958367-18958427)
chr8 (166-226)||(19717514-19717574)
chr8 (166-226)||(27878623-27878683)
chr8 (166-226)||(28018804-28018864)
chr8 (166-202)||(37857409-37857445)
chr8 (166-226)||(42305244-42305304)
chr8 (183-232)||(37131291-37131341)
chr8 (166-202)||(7466846-7466882)
chr8 (170-226)||(9288138-9288194)
[»] chr7 (41 HSPs)
chr7 (1-232)||(4639697-4639928)
chr7 (26-232)||(14741472-14741677)
chr7 (78-199)||(37915804-37915926)
chr7 (166-226)||(42610669-42610729)
chr7 (166-232)||(21067873-21067939)
chr7 (166-232)||(37328400-37328466)
chr7 (171-232)||(44256406-44256467)
chr7 (169-232)||(23017038-23017101)
chr7 (166-232)||(7993650-7993716)
chr7 (166-232)||(21486188-21486254)
chr7 (166-226)||(510145-510205)
chr7 (166-226)||(23101790-23101850)
chr7 (166-226)||(28342810-28342870)
chr7 (166-226)||(39784606-39784666)
chr7 (166-226)||(41827827-41827887)
chr7 (166-230)||(47067205-47067269)
chr7 (166-226)||(48136874-48136934)
chr7 (166-232)||(21024112-21024178)
chr7 (166-226)||(3023433-3023493)
chr7 (166-226)||(29586013-29586073)
chr7 (166-226)||(29614441-29614501)
chr7 (166-226)||(29893471-29893531)
chr7 (166-226)||(44121579-44121639)
chr7 (166-232)||(8675824-8675891)
chr7 (181-232)||(19594256-19594307)
chr7 (166-232)||(30823131-30823197)
chr7 (166-226)||(18838909-18838969)
chr7 (170-226)||(28034498-28034554)
chr7 (166-226)||(37972523-37972583)
chr7 (166-226)||(40460360-40460420)
chr7 (1-43)||(14741686-14741729)
chr7 (183-232)||(11735194-11735244)
chr7 (166-224)||(12740871-12740929)
chr7 (181-231)||(38910528-38910578)
chr7 (181-222)||(6268557-6268598)
chr7 (181-222)||(14732298-14732339)
chr7 (181-210)||(34656673-34656702)
chr7 (181-222)||(35313613-35313654)
chr7 (166-198)||(32884289-32884321)
chr7 (166-226)||(33891880-33891940)
chr7 (166-202)||(39028610-39028646)
[»] chr4 (45 HSPs)
chr4 (1-232)||(29469209-29469441)
chr4 (1-232)||(8084255-8084469)
chr4 (124-232)||(42937360-42937468)
chr4 (170-232)||(29510061-29510123)
chr4 (166-232)||(50517239-50517305)
chr4 (166-232)||(26491114-26491180)
chr4 (169-232)||(41725608-41725671)
chr4 (166-232)||(29856011-29856077)
chr4 (166-232)||(49501173-49501239)
chr4 (166-232)||(49507238-49507304)
chr4 (166-232)||(37916284-37916350)
chr4 (170-232)||(46286755-46286817)
chr4 (166-232)||(49834474-49834540)
chr4 (166-226)||(5441903-5441963)
chr4 (166-226)||(5800465-5800525)
chr4 (148-232)||(23671347-23671431)
chr4 (166-226)||(37828070-37828130)
chr4 (166-226)||(48261579-48261639)
chr4 (169-227)||(26448682-26448740)
chr4 (166-232)||(28484391-28484457)
chr4 (166-226)||(23987697-23987757)
chr4 (146-222)||(24966490-24966566)
chr4 (166-226)||(27768565-27768625)
chr4 (166-226)||(30966983-30967043)
chr4 (166-226)||(51321357-51321417)
chr4 (181-232)||(6487324-6487375)
chr4 (166-217)||(8563349-8563400)
chr4 (181-232)||(9972819-9972870)
chr4 (166-232)||(32322561-32322628)
chr4 (183-232)||(871855-871905)
chr4 (168-226)||(54853118-54853176)
chr4 (166-226)||(32683668-32683728)
chr4 (181-217)||(40162850-40162886)
chr4 (166-226)||(50018693-50018753)
chr4 (181-232)||(51967323-51967374)
chr4 (181-232)||(54561265-54561316)
chr4 (169-199)||(12754566-12754596)
chr4 (166-220)||(29649645-29649699)
chr4 (183-228)||(55165575-55165621)
chr4 (181-222)||(26955392-26955433)
chr4 (195-232)||(32889942-32889979)
chr4 (181-217)||(21486576-21486612)
chr4 (182-210)||(23170738-23170766)
chr4 (182-222)||(25843004-25843044)
chr4 (174-226)||(54341643-54341695)
[»] chr5 (19 HSPs)
chr5 (1-232)||(28622991-28623222)
chr5 (1-232)||(37797942-37798175)
chr5 (68-232)||(7125055-7125220)
chr5 (148-232)||(5651158-5651242)
chr5 (166-226)||(1151932-1151992)
chr5 (166-226)||(4240107-4240167)
chr5 (166-226)||(13999735-13999795)
chr5 (166-226)||(37014355-37014415)
chr5 (166-230)||(39852867-39852931)
chr5 (169-232)||(1460790-1460853)
chr5 (181-232)||(21238763-21238814)
chr5 (166-228)||(29716780-29716842)
chr5 (166-232)||(33892831-33892897)
chr5 (166-226)||(5949612-5949672)
chr5 (181-232)||(2675078-2675129)
chr5 (166-226)||(13926432-13926492)
chr5 (166-226)||(40013346-40013406)
chr5 (38-95)||(5651061-5651117)
chr5 (166-226)||(4549899-4549959)
[»] chr2 (37 HSPs)
chr2 (26-232)||(18899778-18899983)
chr2 (166-226)||(38295707-38295767)
chr2 (166-232)||(18727636-18727702)
chr2 (166-232)||(31847207-31847273)
chr2 (166-226)||(18177772-18177832)
chr2 (169-232)||(35404311-35404374)
chr2 (166-222)||(2308703-2308759)
chr2 (166-226)||(28739935-28739995)
chr2 (166-226)||(43825341-43825401)
chr2 (181-232)||(13898522-13898573)
chr2 (181-232)||(14039139-14039190)
chr2 (170-232)||(6224222-6224284)
chr2 (166-232)||(13833060-13833126)
chr2 (182-232)||(43318766-43318816)
chr2 (169-226)||(3575342-3575399)
chr2 (179-232)||(15224276-15224329)
chr2 (166-226)||(7027404-7027464)
chr2 (166-226)||(28845086-28845146)
chr2 (169-232)||(33262899-33262962)
chr2 (181-232)||(38413458-38413509)
chr2 (166-232)||(33136111-33136177)
chr2 (166-232)||(43078985-43079051)
chr2 (181-222)||(19948594-19948635)
chr2 (163-232)||(24025894-24025963)
chr2 (148-232)||(40829682-40829766)
chr2 (166-230)||(10657927-10657991)
chr2 (62-110)||(15224378-15224426)
chr2 (166-226)||(26789286-26789346)
chr2 (181-217)||(41978898-41978934)
chr2 (181-232)||(3991819-3991870)
chr2 (1-43)||(18899726-18899769)
chr2 (169-232)||(34342284-34342347)
chr2 (181-232)||(45161137-45161188)
chr2 (183-232)||(15926424-15926474)
chr2 (166-232)||(25288658-25288724)
chr2 (170-219)||(379438-379487)
chr2 (169-217)||(2103532-2103580)
[»] chr6 (20 HSPs)
chr6 (68-232)||(1463560-1463725)
chr6 (124-232)||(6788146-6788255)
chr6 (124-232)||(10113726-10113834)
chr6 (169-232)||(31975643-31975706)
chr6 (170-232)||(2606941-2607003)
chr6 (148-230)||(3000288-3000370)
chr6 (149-232)||(16438752-16438835)
chr6 (146-222)||(24194469-24194546)
chr6 (166-226)||(31896137-31896197)
chr6 (166-226)||(34773885-34773945)
chr6 (181-232)||(31996251-31996302)
chr6 (182-232)||(21199600-21199650)
chr6 (169-226)||(4200095-4200152)
chr6 (169-226)||(31067932-31067989)
chr6 (166-226)||(30384705-30384765)
chr6 (176-230)||(14262087-14262141)
chr6 (186-232)||(31535068-31535114)
chr6 (183-232)||(8779586-8779635)
chr6 (169-232)||(7497592-7497656)
chr6 (192-232)||(13461419-13461459)
[»] scaffold0263 (1 HSPs)
scaffold0263 (68-198)||(359-489)
[»] scaffold1128 (1 HSPs)
scaffold1128 (166-232)||(893-959)
[»] scaffold0543 (1 HSPs)
scaffold0543 (166-230)||(11021-11085)
[»] scaffold0421 (1 HSPs)
scaffold0421 (181-232)||(1745-1796)
[»] scaffold0013 (1 HSPs)
scaffold0013 (170-232)||(89326-89389)
[»] scaffold0042 (1 HSPs)
scaffold0042 (166-232)||(57705-57771)
[»] scaffold0383 (1 HSPs)
scaffold0383 (169-232)||(16673-16736)
[»] scaffold0152 (2 HSPs)
scaffold0152 (169-232)||(20909-20972)
scaffold0152 (169-232)||(28829-28892)
[»] scaffold0110 (1 HSPs)
scaffold0110 (166-232)||(39276-39342)
[»] scaffold0246 (1 HSPs)
scaffold0246 (166-217)||(1428-1479)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 49296392 - 49296162
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49296392 tgatatgaaatgtttcacttcagtaagctgaaacgtgttgtaa-gctagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 49296294  T
Q  101 ggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactc 200  Q
    ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49296293 ggccatttttgaagaaaaaaaaatacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaactc 49296194  T
Q  201 gtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||  ||||||||||||||||||||    
T  49296193 gtcaaacttttcgattttaccagaaatcgagt 49296162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 53836236 - 53836012
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 100  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  53836236 tgatatgaaatgtttcacttcagtaagcttaaacgtgttgtaaagctagaaagtaaatatgttttcatttgggcttgaaaaaaatgggcc-aaaacaatg 53836138  T
Q  101 ggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactc 200  Q
    ||||||||||||||          ||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  53836137 ggccatttttgaagaaaaaaaa--acaggagtaaactcgcaaaaacggttaacttgcccgatttcacacgagtttactgagtgttaactcggtcaaactc 53836040  T
Q  201 gtcaaactttctgattttaccagaaatc 228  Q
    ||||||||||| ||||||||||||||||    
T  53836039 gtcaaactttccgattttaccagaaatc 53836012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 8598871 - 8598705
Alignment:
Q  68 tttgggcttgaaaaaaatgggccaaaaacaat--gggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaa-cggtaaactcgcccgattt 164  Q
    |||||||||||||||||||||||||||| ||   |||||||||||||||         || ||||||||||||||||||| |||||||||||||||||||    
T  8598871 tttgggcttgaaaaaaatgggccaaaaaaaaaaagggccatttttgaagaaaaaaaa-tataggagtaaactcgcaaaaaacggtaaactcgcccgattt 8598773  T
Q  165 cacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
     |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8598772 tacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagt 8598705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 22489434 - 22489539
Alignment:
Q  127 aggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||| || ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||    
T  22489434 aggagtaacctagcaaaaacggtaaactcgctcgacttcatacgagtttactgagtgttaactcggtcaaactcgttaaaccttccgattttaccagaaa 22489533  T
Q  227 tcgagt 232  Q
    ||||||    
T  22489534 tcgagt 22489539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 33693368 - 33693302
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33693368 acacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttaccagaaatcgagt 33693302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 21386476 - 21386539
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||    
T  21386476 cgagtttaccgagtgtcaactcggtcaaactcgtcaaacttttcgattttaccagaaatcgagt 21386539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 22489324 - 22489410
Alignment:
Q  4 tatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggcca 91  Q
    ||||||||||||||||| ||| |||| ||||||||||||||  ||||||||| | | | |||||||||||||||||||||||||||||    
T  22489324 tatgaaatgtttcactttagtaagctaaaacgtgttgtaaatctagaaagtaga-aaggtttcatttgggcttgaaaaaaatgggcca 22489410  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 26107888 - 26107822
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||| |||| |||||||||||||||    
T  26107888 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattgtaccagaaatcgagt 26107822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 48379709 - 48379643
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||||||| || | ||| ||||||||||||||||||||    
T  48379709 acacgagtttaccgagtgttaactcagtcaaactcgttaagccttccgattttaccagaaatcgagt 48379643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 49458470 - 49458404
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||| ||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||    
T  49458470 acacgagtttactgagtgttaatttggtcaaactcgtcaaaccttccgattttaccagaaatcgagt 49458404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 42736416 - 42736359
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  42736416 cgagtttaccgaatgttaactcgatcaaactcgtcaaactttttgattttaccagaaa 42736359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 20833456 - 20833396
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||    
T  20833456 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaa 20833396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 4962703 - 4962786
Alignment:
Q  149 taaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||  ||| || ||| |||||||||||||||||||||||||||||||||||||| ||  ||||||||  ||||||||||    
T  4962703 taaactcggtcgagtttacatgagtttaccgagtgttaactcggtcaaactcgtcaaacctttcgattttacttgaaatcgagt 4962786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 50902950 - 50903016
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  ||||||||||||| |||||    
T  50902950 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgagt 50903016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 34483739 - 34483799
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  34483739 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttcaaattttaccagaaa 34483799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 39038646 - 39038583
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||  ||||||||||| |||| ||| |||||||||||||| |||||    
T  39038646 cgagtttaccgagtgttaacttagtcaaactcgttaaaccttccgattttaccagaaaccgagt 39038583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 44905498 - 44905561
Alignment:
Q  168 acgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgag 231  Q
    ||||||||||||||||||||||| |||||| |||| || | |||||||||||||||||| ||||    
T  44905498 acgagtttaccgagtgttaactcagtcaaattcgttaagccttctgattttaccagaaaccgag 44905561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 52810917 - 52810858
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaa 225  Q
    |||| |||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||    
T  52810917 acacaagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaa 52810858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 7437560 - 7437626
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||||||||||||  || || ||| |||||||||| ||| |||||    
T  7437560 acacgagtttaccgagtgttaactcggtcaaactcaccataccttccgattttaccaaaaaccgagt 7437626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 16155276 - 16155210
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||  |||||| || ||| |||||    
T  16155276 acacgagtttactgagtgttaactcggtcaaactcgtcaaaccttccaattttatcaaaaaccgagt 16155210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 37832682 - 37832628
Alignment:
Q  168 acgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    ||||||||| |  ||||||||||||||||||||||||||||||||||||| ||||    
T  37832682 acgagtttaacacgtgttaactcggtcaaactcgtcaaactttctgatttcacca 37832628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 51737333 - 51737394
Alignment:
Q  171 agtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||| ||||||||||| |||| ||| |||||||| ||||| |||||    
T  51737333 agtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttactagaaaccgagt 51737394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 31645902 - 31645962
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||| | |||| |||  |||||||||||||    
T  31645902 acacgagtttaccgagtgttaactcagtcaaactctttaaaccttccaattttaccagaaa 31645962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 36673793 - 36673853
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||| ||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  36673793 acacgagtttatcgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 36673853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 40897690 - 40897630
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||| ||||||    
T  40897690 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttatcagaaa 40897630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 9818568 - 9818619
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||| ||||||||||||||||||||||||| ||||| |||| |||||||||    
T  9818568 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagt 9818619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 18750199 - 18750136
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||| ||||||||||| || | |||  ||||||||||||| |||||    
T  18750199 cgagtttaccgagtgttaactcagtcaaactcgttaagccttccaattttaccagaaaccgagt 18750136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 49293900 - 49293849
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||| ||||||||||||||||||||||| ||||| |||| |||||||||    
T  49293900 gtgttaattcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagt 49293849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 50761741 - 50761803
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatc 228  Q
    ||||||||||||| ||||||||||| ||||||||||| |||| |||  |||| ||||||||||    
T  50761741 acacgagtttacctagtgttaactcagtcaaactcgttaaaccttccaatttcaccagaaatc 50761803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 23753030 - 23753086
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    ||||||||||||||||||||||||| |||||||| || |||| |||  |||||||||    
T  23753030 acacgagtttaccgagtgttaactcagtcaaactggttaaaccttccaattttacca 23753086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 37455406 - 37455346
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||  |||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  37455406 acacgagtttagtgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 37455346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 52617615 - 52617679
Alignment:
Q  169 cgagtttac-cgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||| ||||||||||||  ||||||||||| |||| ||| |||||||||||||| |||||    
T  52617615 cgagtttacacgagtgttaacttagtcaaactcgttaaaccttccgattttaccagaaaccgagt 52617679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 27261490 - 27261439
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||| |||||| ||||||||||||| ||||| |||| |||||||||    
T  27261490 gtgttaactcagtcaaattcgtcaaactttccgatttcaccaaaaatcgagt 27261439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 7665720 - 7665637
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcg-gtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||  ||| || |||||||||||||||||  ||||||  |||||||||||||||  ||| |||||||||| |||||||||    
T  7665720 gtaaactcggtcgagtttacacgagtttaccgagt--taactctagtcaaactcgtcaaatattccgattttaccaaaaatcgagt 7665637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 17946780 - 17946721
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||    |||||||| |||| ||| |||||||||||||| |||||    
T  17946780 cgagtttaccgagtgttaactc----aaactcgttaaaccttccgattttaccagaaaccgagt 17946721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 29690728 - 29690692
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattt 217  Q
    |||||||||||||||||||||||| || |||||||||    
T  29690728 gtgttaactcggtcaaactcgtcatacattctgattt 29690692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 41353719 - 41353488
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41353719 tgatatgaaatgtttcacttcagtaagttgaaacgtgttgtaaagctagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaaaaatg 41353620  T
Q  101 ggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactc 200  Q
    ||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41353619 ggccatttttgaagaaaaaaaaatacaggagtaaactcgtaaaaacggtaaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaactc 41353520  T
Q  201 gtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| ||||||||||||||||||||    
T  41353519 gtcaaactttccgattttaccagaaatcgagt 41353488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 11578923 - 11579150
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  11578923 tgatatgaaatgtttcacttcagtaagctgaaacgtgttgtaaagctagaaagtaaatatgttttcatttgggcttgaaaaaaatgggcaaaaaaaaatg 11579022  T
Q  101 ggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactc 200  Q
    ||||||||||||||         |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11579023 ggccatttttgaagaaaaaaaaatacaggagtaaactcgcaaaaacggtgaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaactc 11579122  T
Q  201 gtcaaactttctgattttaccagaaatc 228  Q
    ||||||||||| ||||||||||||||||    
T  11579123 gtcaaactttccgattttaccagaaatc 11579150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 26757913 - 26757682
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 100  Q
    |||||||||||||||||||| ||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26757913 tgatatgaaatgtttcacttgagtaagctgaaacatgttgtaa-gctagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 26757815  T
Q  101 ggccatttttgaagnnnnnnnnn-tacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaact 199  Q
    ||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26757814 ggccatttttgaagaaaaaaaaaatacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaact 26757715  T
Q  200 cgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||| ||||||||||||||||||||    
T  26757714 cgtcaaactttccgattttaccagaaatcgagt 26757682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 8147589 - 8147384
Alignment:
Q  26 agctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatgggccatttttgaagnnnnnnnnnta 125  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         ||    
T  8147589 agctgaaacgtgttgtaaagctagaaagtaaatatgttt-catttgggcttgaaaaaaatgggccaaaaacaatgggccatttttgaagaaaaaaaaata 8147491  T
Q  126 caggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaa 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||   ||||||||||||    
T  8147490 caggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaactcgtcaaactttgcaattttaccagaa 8147391  T
Q  226 atcgagt 232  Q
    |||||||    
T  8147390 atcgagt 8147384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 1243154 - 1243360
Alignment:
Q  26 agctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatgggccatttttgaagnnnnnnnnn-t 124  Q
    ||||||||| |||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||| |||          |    
T  1243154 agctgaaacatgttgtaaagctagaaagtaaatatgttt-catttgagcttgaaaaaaatgggccaaaaacaatgggacattttttaagaaaaaaaaaat 1243252  T
Q  125 acaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccaga 224  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  1243253 acaggagtaaactcgctaaaacggtaaactcgcccgatttcacatgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccaga 1243352  T
Q  225 aatcgagt 232  Q
    ||||||||    
T  1243353 aatcgagt 1243360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 9192256 - 9192091
Alignment:
Q  68 tttgggcttgaaaaaaatgggccaaa-aacaatgggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaa-cggtaaactcgcccgatttc 165  Q
    |||||||||||||||||||||||||| || || |||||||||||||||         |||||||||||||||||||||| |||||||||||||||||||     
T  9192256 tttgggcttgaaaaaaatgggccaaacaaaaaagggccatttttgaagaaaaaaaa-tacaggagtaaactcgcaaaaaacggtaaactcgcccgatttt 9192158  T
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9192157 acacgagtttactgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 9192091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 51107124 - 51106959
Alignment:
Q  68 tttgggcttgaaaaaaatgggccaaaaacaat-gggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaa-cggtaaactcgcccgatttc 165  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||         || ||||||||||||||||||| |||||||||||||||||||     
T  51107124 tttgggcttgaaaaaaatgggccaaaaaaaaaagggccatttttgaagaaaaaaaa-tataggagtaaactcgcaaaaaacggtaaactcgcccgatttt 51107026  T
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51107025 acacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagt 51106959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 4005243 - 4005134
Alignment:
Q  124 tacaggagtaaactcgcaaaaa-cggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  4005243 tacaggagtaaactcgcaaaaaacggtaaactcgcccgattttacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttacca 4005144  T
Q  223 gaaatcgagt 232  Q
    ||||||||||    
T  4005143 gaaatcgagt 4005134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 47371563 - 47371629
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  47371563 acacgagtttaccgagtgttaactcggtcaaactcggcaaaccttccgattttaccagaaatcgagt 47371629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 5209338 - 5209422
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||| | ||||| |||| ||||||  ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  5209338 gtaaactcggctgattttacacaagtttattgagtgttaactcgatcaaactcgtcaaactttctgatttcaccagaaatcgagt 5209422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 45273127 - 45273061
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||    
T  45273127 acacgagtttaccgagtgttaactcagtcaaactcgtcaaaccttccgattttaccagaaaccgagt 45273061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 49453048 - 49453114
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||||||||||| ||||||| || ||||||| |||||||||||||    
T  49453048 acacgagtttaccgagtgttaactcggtcaaacttgtcaaaccttatgatttttccagaaatcgagt 49453114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 5494736 - 5494802
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||| |||||    
T  5494736 acacgagtttatcgagtgttaactcagtcaaactcatcaaaccttctgattttaccagaaaccgagt 5494802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 3583549 - 3583610
Alignment:
Q  171 agtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||    
T  3583549 agtttaccgagtgttaactcggttaaactcgtcaaactttccgattttactagaaaccgagt 3583610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 42304470 - 42304554
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||  ||| || ||||||||||||| ||||||||||||||||||||||| |||| |||  ||||||||||||| |||||    
T  42304470 gtaaactcggtcgagtttacacgagtttacctagtgttaactcggtcaaactcgttaaaccttccaattttaccagaaaccgagt 42304554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 35177201 - 35177264
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||| |||||||||||||||||||||||||||| | ||| ||||||| ||||||||||||    
T  35177201 cgagtttatcgagtgttaactcggtcaaactcgtcaatccttccgattttatcagaaatcgagt 35177264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 6313136 - 6313076
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  6313136 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 6313076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 8140871 - 8140935
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    |||| |||||||||||||||||||| ||||||||| | |||| |||| |||||||||||||||||    
T  8140871 acacaagtttaccgagtgttaactcagtcaaactcattaaaccttctaattttaccagaaatcga 8140935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 15834672 - 15834736
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  ||||||||| |||||||    
T  15834672 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccaaaaatcga 15834736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 25612652 - 25612592
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  25612652 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 25612592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 29396072 - 29396132
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  29396072 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 29396132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 51702155 - 51702095
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| || | |||||||||||||    
T  51702155 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttttaattttaccagaaa 51702095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 46328546 - 46328480
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||  |||||||||| |||| ||| ||||||| |||||| |||||    
T  46328546 acacgagtttaccgagtgttaactcaatcaaactcgttaaaccttccgattttaacagaaaccgagt 46328480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 48966479 - 48966541
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatc 228  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||  |||| | ||||||||    
T  48966479 acacgagtttaccgagtattaactcggtcaaactcgtcaaaccttccaatttcatcagaaatc 48966541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 18799012 - 18798952
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||| ||||| |||| |||  |||||||||||||    
T  18799012 acacgagtttaccgagtgttaactcagtcaatctcgttaaaccttccaattttaccagaaa 18798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 25253646 - 25253566
Alignment:
Q  146 cggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||  ||| || ||| ||||||||||| ||||||||| |||||||||||||||  ||| || |||||||||||    
T  25253646 cggtaaactcgatcgagtttacaagagtttaccgaatgttaactcagtcaaactcgtcaaatcttccgagtttaccagaaa 25253566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 29219681 - 29219621
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||| ||||||||    
T  29219681 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaatttcaccagaaa 29219621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 38535784 - 38535844
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| ||   ||| ||||||||||||||    
T  38535784 acacgagtttaccgagtgttaactcagtcaaactcgttaagtcttccgattttaccagaaa 38535844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 38558002 - 38558062
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| ||   ||| ||||||||||||||    
T  38558002 acacgagtttaccgagtgttaactcagtcaaactcgttaagtcttccgattttaccagaaa 38558062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 48177080 - 48177140
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||| |||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  48177080 acacgagtttactgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 48177140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 15927427 - 15927372
Alignment:
Q  171 agtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||| ||| ||||||||| |||||||||||||||||||| ||||||| ||||||    
T  15927427 agtttatcgaatgttaactcagtcaaactcgtcaaactttccgattttatcagaaa 15927372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 28403916 - 28403975
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaac 207  Q
    |||||||||  ||| || ||| |||||||||||||||||||||||||||| |||||||||    
T  28403916 gtaaactcggtcgagtttacatgagtttaccgagtgttaactcggtcaaattcgtcaaac 28403975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 1243105 - 1243147
Alignment:
Q  3 atatgaaatgtttcacttcagtgagctgaaacgtgttgtaaag 45  Q
    |||||||||||||||||||||| |||||||||| |||||||||    
T  1243105 atatgaaatgtttcacttcagtaagctgaaacgagttgtaaag 1243147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 34019237 - 34019188
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    |||||||||||||||| |||||||||||||| ||||| |||| |||||||    
T  34019237 gtgttaactcggtcaacctcgtcaaactttccgatttcaccaaaaatcga 34019188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8147640 - 8147596
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaag 45  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  8147640 tgatatgaaatgtttcacttaagtaagttgaaacgtgttgtaaag 8147596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 32760069 - 32760153
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||  ||| || |||||||||||  |||||||||||||||||||||||| || | | | |||||||| ||||| |||||    
T  32760069 gtaaactcgatcgagtttacacgagtttagtgagtgttaactcggtcaaactcgttaagcctcccgattttactagaaaccgagt 32760153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 7798618 - 7798567
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||| ||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  7798618 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 7798567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 33886863 - 33886914
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||| ||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  33886863 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 33886914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 33957387 - 33957336
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||| ||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  33957387 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 33957336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 28387093 - 28387127
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactc 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  28387093 acacgagtttaccgagtgttaactcagtcaaactc 28387127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 49231567 - 49231501
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||| |||||||||| ||||||||  ||||||||||| |||| ||| |||| ||||||||| |||||    
T  49231567 acacaagtttaccgattgttaacttagtcaaactcgttaaaccttccgattataccagaaaccgagt 49231501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 1108468 - 1108419
Alignment:
Q  183 gttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||| |||||||||||||||||||| ||||| |||| ||| |||||    
T  1108468 gttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 1108419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 25830887 - 25830928
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaac 207  Q
    |||||||||||| |||||||||||| ||||||||||| ||||    
T  25830887 acacgagtttactgagtgttaactcagtcaaactcgttaaac 25830928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 49236974 - 49237019
Alignment:
Q  186 aactcggtcaaactcgtcaaactttctgattttaccagaaatcgag 231  Q
    |||||||||||||||||||||| ||  |||||||||||||| ||||    
T  49236974 aactcggtcaaactcgtcaaacctttcgattttaccagaaaccgag 49237019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 9322155 - 9322187
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaac 198  Q
    ||||||||||||||||||||||||| |||||||    
T  9322155 acacgagtttaccgagtgttaactcagtcaaac 9322187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 19484491 - 19484261
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19484491 tgatatgaaatgtttcacttcagtaagttgaaacgtgttgtaaagctagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaa-aatg 19484393  T
Q  101 ggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactc 200  Q
    ||||||||||||||         |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19484392 ggccatttttgaagaaaaaaaaatacaggagtaaactcgtaaaaacggtaaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaactc 19484293  T
Q  201 gtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| ||||||||||||||||||||    
T  19484292 gtcaaactttccgattttaccagaaatcgagt 19484261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 8029811 - 8029895
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||  ||| || |||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  8029811 gtaaactcggtcgagtttacacgattttaccgagtgttaactcggtcaaactcgtcaaaccttccgattttaccagaaatcgagt 8029895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 26856666 - 26856600
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| |||||    
T  26856666 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttctgattttaccagaaaccgagt 26856600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 31625869 - 31625803
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| |||||    
T  31625869 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaaccgagt 31625803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 10294982 - 10295045
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| |||||    
T  10294982 cgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaaccgagt 10295045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 12522422 - 12522488
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||   ||||||||||||| |||||    
T  12522422 acacgagtttaccaagtgttaactcggtcaaactcgtcaaacctttcaattttaccagaaaccgagt 12522488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 27915567 - 27915631
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    ||||||||| | |||||||||||||||||||||||||||||| | | ||||||| ||||||||||    
T  27915567 acacgagttcatcgagtgttaactcggtcaaactcgtcaaacctaccgattttatcagaaatcga 27915631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 27961986 - 27962050
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    ||||||||| | |||||||||||||||||||||||||||||| | | ||||||| ||||||||||    
T  27961986 acacgagttcatcgagtgttaactcggtcaaactcgtcaaacctaccgattttatcagaaatcga 27962050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 43166316 - 43166376
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||   |||||||||||||    
T  43166316 acacgagtttaccgagtgttaactcagtcaaactcgtcaaacctttcaattttaccagaaa 43166376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 44725431 - 44725491
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  44725431 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 44725491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 39467158 - 39467220
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatc 228  Q
    ||||||||||||||||||||||||| ||||||||||  |||| |||  |||||||||||||||    
T  39467158 acacgagtttaccgagtgttaactcagtcaaactcgctaaaccttccaattttaccagaaatc 39467220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 14781772 - 14781832
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||| |||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  14781772 acacgagtttactgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 14781832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 18305616 - 18305676
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||| | |||| |||  |||||||||||||    
T  18305616 acacgagtttaccgagtgttaactcagtcaaactctttaaaccttccaattttaccagaaa 18305676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 26620338 - 26620394
Alignment:
Q  170 gagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||| |||||||||||||| ||||||||||||||||||  ||||||| ||||||    
T  26620338 gagtttatcgagtgttaactcgatcaaactcgtcaaacttttcgattttatcagaaa 26620394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 43308148 - 43308208
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| |||||||| || |||| |||  |||||||||||||    
T  43308148 acacgagtttaccgagtgttaactcagtcaaacttgttaaaccttccaattttaccagaaa 43308208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 17234820 - 17234760
Alignment:
Q  171 agtttaccgagtgttaactcg-gtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||  ||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  17234820 agtttaccgagt--taactcgagtcaaactcgtcaaacattccgattttaccagaaatcgagt 17234760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 28317075 - 28317126
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||  ||||| |||| |||||||||    
T  28317075 gtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaatcgagt 28317126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 42423298 - 42423261
Alignment:
Q  170 gagtttaccgagtgttaactcggtcaaactcgtcaaac 207  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  42423298 gagtttacccagtgttaactcggtcaaactcgtcaaac 42423261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 16364267 - 16364207
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||||||||||||| |  ||||||||||| |||| ||| |||||||| |||||    
T  16364267 acacgagtttaccgagtgttaatttagtcaaactcgttaaaccttccgattttactagaaa 16364207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 18958367 - 18958427
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||| || || |||| |||  |||||||||||||    
T  18958367 acacgagtttaccgagtgttaactcagtcaatcttgttaaaccttccaattttaccagaaa 18958427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 19717514 - 19717574
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||| |||||||||||||||||||| ||||| ||||| |||| |||  |||||||||||||    
T  19717514 acacaagtttaccgagtgttaactcagtcaatctcgttaaaccttccaattttaccagaaa 19717574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 27878623 - 27878683
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||| | |||||||||||||  ||||||||||||||| | | ||||||||||||||    
T  27878623 acacgagttcatcgagtgttaactctatcaaactcgtcaaacctaccgattttaccagaaa 27878683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 28018804 - 28018864
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||| | |||||||||||||  ||||||||||||||| | | ||||||||||||||    
T  28018804 acacgagttcatcgagtgttaactctatcaaactcgtcaaacctaccgattttaccagaaa 28018864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 37857445 - 37857409
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgt 202  Q
    ||||||||||||||||||||||||| |||||||||||    
T  37857445 acacgagtttaccgagtgttaactcagtcaaactcgt 37857409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 42305244 - 42305304
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||| ||||||||| ||||| ||||| |||| |||  |||||||||||||    
T  42305244 acacgagtttaccgaatgttaactcagtcaatctcgttaaaccttccaattttaccagaaa 42305304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 37131291 - 37131341
Alignment:
Q  183 gttaactcg-gtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||| ||||||||| |||||| ||||||||||||||||| ||||||    
T  37131291 gttaactcgagtcaaactcttcaaacattctgattttaccagaagtcgagt 37131341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 7466882 - 7466846
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgt 202  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  7466882 acacgagtttatcgagtgttaactcagtcaaactcgt 7466846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 9288138 - 9288194
Alignment:
Q  170 gagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||| ||| |||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  9288138 gagtatactgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 9288194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 4639697 - 4639928
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 100  Q
    |||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4639697 tgatatgaaatgtttcacttcagtaagttgaaacgtgttgtaaagctagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 4639796  T
Q  101 ggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactc 200  Q
    ||||||||||||||         |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  4639797 ggccatttttgaaggaaaaaaaatacaggagtaaactcgtaaaaacggtaaactcgcccgatttcacatgagtttactgagtgttaactcggtcaaactc 4639896  T
Q  201 gtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||| |||| ||||||||||||||| ||||    
T  4639897 gtcaaaatttccgattttaccagaaatagagt 4639928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 14741677 - 14741472
Alignment:
Q  26 agctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatgggccatttttgaagnnnnnnnnnta 125  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         ||    
T  14741677 agcttaaacgtgttgtaaagctagaaagtaaatatgttt-catttgggcttgaaaaaaatgggccaaaaacaatgggccatttttgaagaaaaaaaaata 14741579  T
Q  126 caggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaa 225  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  14741578 ctggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttactagaa 14741479  T
Q  226 atcgagt 232  Q
    |||||||    
T  14741478 atcgagt 14741472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 37915804 - 37915926
Alignment:
Q  78 aaaaaaatgggccaaaaacaatgggccatttttgaagnnnnnnnnn-tacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagttta 176  Q
    |||||||||||||||||||||||||||||||||||||          ||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  37915804 aaaaaaatgggccaaaaacaatgggccatttttgaagaaaaaaaaaatacaggagtaaactcacaaaaacggtaaactcgcccaatttcacacgagttta 37915903  T
Q  177 ccgagtgttaactcggtcaaact 199  Q
    | |||||||||||||||||||||    
T  37915904 ctgagtgttaactcggtcaaact 37915926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 42610729 - 42610669
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  42610729 acacgagtttacccagtgttaactcggtcaaactcgtcaaaccttctgattttaccagaaa 42610669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 21067939 - 21067873
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  21067939 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaatcgagt 21067873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 37328466 - 37328400
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||| ||| |||| ||| ||||||||||||||||||||    
T  37328466 acacgagtttaccgagtgttaactcagtcaaacacgttaaaccttccgattttaccagaaatcgagt 37328400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 44256406 - 44256467
Alignment:
Q  171 agtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  44256406 agtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaatcgagt 44256467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 23017101 - 23017038
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||||||||||  |||  ||||||| |||||||||||    
T  23017101 cgagtttaccgagtgttaactcggtcaaactcgtcaaatcttccaattttacgagaaatcgagt 23017038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 7993716 - 7993650
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||| |||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| |||||    
T  7993716 acaccagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaaccgagt 7993650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 21486254 - 21486188
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||| || ||||||    
T  21486254 acacgagtttaccgagtgttaactcgatcaaactcatcaaaccttctaattttaccaaaattcgagt 21486188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 510205 - 510145
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  510205 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 510145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 23101850 - 23101790
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  23101850 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 23101790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 28342870 - 28342810
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  28342870 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 28342810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 39784666 - 39784606
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  39784666 acacgagtttaccgagtgttaactctgtcaaactcgttaaaccttccaattttaccagaaa 39784606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 41827887 - 41827827
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| |||||||| || |||  ||||||||||||||||||    
T  41827887 acacgagtttaccgagtgttaactcagtcaaacttgttaaatcttctgattttaccagaaa 41827827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 47067269 - 47067205
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||   |||||||||||||||||    
T  47067269 acacgagtttaccgagtgttaactcagtcaaactcgttaaacctttcaattttaccagaaatcga 47067205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 48136874 - 48136934
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||| |||| ||||||||||||| |||||||||||||||| |||| |||||||||||||    
T  48136874 acacgaatttatcgagtgttaactcagtcaaactcgtcaaaccttctaattttaccagaaa 48136934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 21024178 - 21024112
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  21024178 acacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 21024112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 3023493 - 3023433
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||| ||||||    
T  3023493 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttatcagaaa 3023433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 29586073 - 29586013
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||| | |||| ||| ||||||||| ||||    
T  29586073 acacgagtttaccgagtgttaactcagtcaaactcattaaaccttccgattttacccgaaa 29586013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 29614441 - 29614501
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||   |||||||||||||    
T  29614441 acacgagtttaccgagtgttaactcagtcaaactcgttaaacctttcaattttaccagaaa 29614501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 29893531 - 29893471
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||  ||||| ||||||||    
T  29893531 acacgagtttaccgagtgttaactcagtcaaactcgttaaacctttcgatttcaccagaaa 29893471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 44121579 - 44121639
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||| ||||||||||| ||||||||||| || | ||| ||||||||||||||    
T  44121579 acacgagtttaccaagtgttaactcagtcaaactcgttaagccttccgattttaccagaaa 44121639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 8675891 - 8675824
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaa-ctttctgattttaccagaaatcgagt 232  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||   |||||||||||| |||||    
T  8675891 acacgagtttatcgagtgttaactcagtcaaactcgtcaaacctttcgatttttaccagaaaccgagt 8675824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 19594307 - 19594256
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  19594307 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 19594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 30823197 - 30823131
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||  ||||||||||  ||| ||| |||||||| ||||| |||||    
T  30823197 acacgagtttaccgagtgttaactcaatcaaactcgttgaaccttccgattttactagaaaccgagt 30823131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 18838969 - 18838909
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||| ||||||||  ||||||||||| |||| |||  |||||||||||||    
T  18838969 acacgagtttaccgaatgttaacttagtcaaactcgttaaaccttccaattttaccagaaa 18838909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 28034498 - 28034554
Alignment:
Q  170 gagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||| ||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  28034498 gagtttaccaagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 28034554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 37972523 - 37972583
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||| |||| |||||| |||||| |||| |||| ||| ||||||||||||||    
T  37972523 acacgagtttaccaagtgctaactcagtcaaattcgttaaaccttccgattttaccagaaa 37972583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 40460360 - 40460420
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||| ||| |||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  40460360 acacgagtatactgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 40460420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14741729 - 14741686
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaa-cgtgttgtaa 43  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  14741729 tgatatgaaatgtttcacttcagtaagctgaaaccgtgttgtaa 14741686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 11735194 - 11735244
Alignment:
Q  183 gttaactcg-gtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||| |||||||||| ||||| ||| ||||||||||||||||||||    
T  11735194 gttaactcgagtcaaactcggcaaacattccgattttaccagaaatcgagt 11735244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 12740929 - 12740871
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccaga 224  Q
    |||||| ||||||||||| |||||  |||||||||||||||| |||  |||||||||||    
T  12740929 acacgactttaccgagtgctaacttagtcaaactcgtcaaaccttccaattttaccaga 12740871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 38910578 - 38910528
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgag 231  Q
    |||||||||||||||| |||||||||||||| ||||| |||| ||| ||||    
T  38910578 gtgttaactcggtcaatctcgtcaaactttccgatttcaccaaaaaccgag 38910528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 6268598 - 6268557
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    ||||||||||||||||||||||||||| |||| |||| ||||    
T  6268598 gtgttaactcggtcaaactcgtcaaacattctaatttcacca 6268557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 14732298 - 14732339
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||    
T  14732298 gtgttcactcggtcaaactcgtcaaactttccgatttcacca 14732339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 210
Target Start/End: Complemental strand, 34656702 - 34656673
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaacttt 210  Q
    ||||||||||||||||||||||||||||||    
T  34656702 gtgttaactcggtcaaactcgtcaaacttt 34656673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 35313654 - 35313613
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    |||||||||||||||||||| |||||||||| ||||| ||||    
T  35313654 gtgttaactcggtcaaactcatcaaactttccgatttcacca 35313613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Complemental strand, 32884321 - 32884289
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaac 198  Q
    ||||||||||||||||||||||||| |||||||    
T  32884321 acacgagtttaccgagtgttaactcagtcaaac 32884289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 33891880 - 33891940
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||  |||||||||||| |||||| |||| |||| |||  |||||||||||||    
T  33891880 acacgagtttattgagtgttaactcagtcaaattcgttaaaccttccaattttaccagaaa 33891940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 39028646 - 39028610
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgt 202  Q
    |||||||||||| |||||||||||| |||||||||||    
T  39028646 acacgagtttactgagtgttaactcagtcaaactcgt 39028610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 29469441 - 29469209
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaa-tgggccaaaaacaat 99  Q
    |||||||||||||||||||||| | ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29469441 tgatatgaaatgtttcacttcaataagctgaaacgtattgtaa-gctagaaagtaaatatgttttcatttgggcttgaaaaaaaatgggccaaaaacaat 29469343  T
Q  100 gggccatttttgaagnnnnnnnnn-tacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaac 198  Q
    |||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29469342 gggccatttttgaagaaaaaaaaaatacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaac 29469243  T
Q  199 tcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||| ||||||||||||||||||||    
T  29469242 tcgtcaaactttccgattttaccagaaatcgagt 29469209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 8084469 - 8084255
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8084469 tgatatgaaatgtttcacttcagtaagctgaaacgtgttgtaa-gctagaaagtaaatatgttgtcatttgggcttgaaaaaaatgggccaaaaacaatg 8084371  T
Q  101 ggccatttttgaag-nnnnnnnnntacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaact 199  Q
    ||||||||||||||          ||||||||||||||                 ||||||||||||||||||||||| |||||||||||||||||||||    
T  8084370 ggccatttttgaagaaaaaaaaaatacaggagtaaact-----------------cgcccgatttcacacgagtttactgagtgttaactcggtcaaact 8084288  T
Q  200 cgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||| |||||||| |||||||||||    
T  8084287 cgtcaaactttccgattttactagaaatcgagt 8084255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 42937360 - 42937468
Alignment:
Q  124 tacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccag 223  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||    
T  42937360 tacaggagtaaactcggaaaaacggtaaactcgcctaatttcacacgagtttacggagtgttaactcggtcaaactcgtcaaacttttcgattttaccag 42937459  T
Q  224 aaatcgagt 232  Q
    |||||||||    
T  42937460 aaatcgagt 42937468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 29510061 - 29510123
Alignment:
Q  170 gagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  29510061 gagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttaccagaaattgagt 29510123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 50517305 - 50517239
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||    
T  50517305 acacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttccaattttaccagaaatcgagt 50517239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 26491114 - 26491180
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  26491114 acacgagtttaccaaatgttaactcggtcaaactcgtcaaaccttctgattttaccagaaaccgagt 26491180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 41725671 - 41725608
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  41725671 cgagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaatcgagt 41725608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 29856077 - 29856011
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||||||||    
T  29856077 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaatcgagt 29856011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 49501173 - 49501239
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| |||||    
T  49501173 acacgagtttaccgagtgttaactccgtcaaactcgttaaaccttccgattttaccagaaaccgagt 49501239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 49507238 - 49507304
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||| |||||    
T  49507238 acacgagtttaccgagtgttaactccgtcaaactcgttaaaccttccgattttaccagaaaccgagt 49507304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 37916350 - 37916284
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||| |||||||||||| ||||||||||| |||| ||| |||||||||||||| |||||    
T  37916350 acacgagtttactgagtgttaactcagtcaaactcgttaaaccttccgattttaccagaaaccgagt 37916284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 46286817 - 46286755
Alignment:
Q  170 gagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||| |||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  46286817 gagtttatcgagtgttaactcggtcaaactcgtcaaaccttccgagtttactagaaatcgagt 46286755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 49834474 - 49834540
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||| ||||||| ||||||||||| |||| ||| |||||||||||||| |||||    
T  49834474 acacgagtttaccgagtattaactcagtcaaactcgttaaaccttccgattttaccagaaaccgagt 49834540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 5441963 - 5441903
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  5441963 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 5441903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 5800525 - 5800465
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||| ||||||||||||| ||||||||||| |||| ||||||| ||||||||||    
T  5800525 acacgagtttatcgagtgttaactcagtcaaactcgttaaaccttctgatgttaccagaaa 5800465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 23671347 - 23671431
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||| | || |||| |||||||||||| |||| |||||| | ||||||||||||||||||  ||||| ||||||||||||||    
T  23671347 gtaaacttggccaattttacacgagtttactgagtcttaacttgctcaaactcgtcaaacttttcgatttcaccagaaatcgagt 23671431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 37828070 - 37828130
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  37828070 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 37828130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 48261639 - 48261579
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  48261639 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 48261579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 26448740 - 26448682
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaat 227  Q
    |||||||| || ||||||||||||||||||||||||||||||| ||||| |||| ||||    
T  26448740 cgagtttaacgcgtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaat 26448682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 28484457 - 28484391
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| ||||||||||||| ||||||||||| |||| |||  ||||||||||||| |||||    
T  28484457 acacgagtttatcgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaaccgagt 28484391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 23987757 - 23987697
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||| ||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  23987757 acacgagtttacctagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 23987697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 222
Target Start/End: Original strand, 24966490 - 24966566
Alignment:
Q  146 cggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    |||||||||||  ||| || ||||||||||||| |||||||||| ||||||||||| ||||| |||  |||||||||    
T  24966490 cggtaaactcggtcgagtttacacgagtttaccaagtgttaacttggtcaaactcggcaaaccttcccattttacca 24966566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 27768625 - 27768565
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||| ||||||||| ||||||||||| |||| |||  |||||||||||||    
T  27768625 acacgagtttaccgaatgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 27768565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 30966983 - 30967043
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||  ||||||||||| |||| |||  |||||||||||||    
T  30966983 acacgagtttaccgagtgttaacttagtcaaactcgttaaaccttccaattttaccagaaa 30967043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 51321417 - 51321357
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| |||||||| || |||| |||  |||||||||||||    
T  51321417 acacgagtttaccgagtgttaactcagtcaaactggttaaaccttccaattttaccagaaa 51321357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 6487324 - 6487375
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||| ||||||||||||||||||||||||| ||||| |||| |||||||||    
T  6487324 gtgttcactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagt 6487375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 8563349 - 8563400
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattt 217  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||| |||||    
T  8563349 acacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgattt 8563400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 9972870 - 9972819
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  9972870 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 9972819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 32322628 - 32322561
Alignment:
Q  166 acacgagtttaccgagtgttaa-ctcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||| ||| ||||||||||| || | ||| |||||||||||||| |||||    
T  32322628 acacgagtttaccgagtgttaaactcagtcaaactcgttaagccttccgattttaccagaaaccgagt 32322561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 871905 - 871855
Alignment:
Q  183 gttaactcg-gtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  871905 gttaactcgagtcaaactcgtcaaacattccgattttaccagaaatcgagt 871855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 54853118 - 54853176
Alignment:
Q  168 acgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||||||||||||||  |||||||||| |||| |||| ||||||| |||||    
T  54853118 acgagtttaccgagtgttaactcaatcaaactcgttaaaccttctaattttacgagaaa 54853176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 32683668 - 32683728
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||||||||||||||||  |||||||||| |||| |||  |||||| ||||||    
T  32683668 acacgagtttaccgagtgttaactcattcaaactcgttaaaccttccaattttaacagaaa 32683728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 40162886 - 40162850
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattt 217  Q
    ||||||||||||||||||||||||||||||| |||||    
T  40162886 gtgttaactcggtcaaactcgtcaaactttccgattt 40162850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 50018753 - 50018693
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||| ||| | |||| |||  |||||||||||||    
T  50018753 acacgagtttaccgagtgttaactctgtcaatctctttaaaccttccaattttaccagaaa 50018693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 51967374 - 51967323
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||  ||||| |||| ||| |||||    
T  51967374 gtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagt 51967323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 54561316 - 54561265
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||| |||||||||||| ||||| |||| ||| |||||    
T  54561316 gtgttaactcggtcaaacacgtcaaactttccgatttcaccaaaaaccgagt 54561265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 199
Target Start/End: Complemental strand, 12754596 - 12754566
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaact 199  Q
    |||||||||||||||||||||||||||||||    
T  12754596 cgagtttaccgagtgttaactcggtcaaact 12754566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 29649645 - 29649699
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttac 220  Q
    ||||||||||||||||||||||||| || |||||||| |||| |||  |||||||    
T  29649645 acacgagtttaccgagtgttaactcagttaaactcgttaaaccttccaattttac 29649699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 55165621 - 55165575
Alignment:
Q  183 gttaactcg-gtcaaactcgtcaaactttctgattttaccagaaatc 228  Q
    ||||||||| |||||||||||||||| |||||||||||||| |||||    
T  55165621 gttaactcgagtcaaactcgtcaaacattctgattttaccataaatc 55165575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 26955433 - 26955392
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    ||||||||||||||||||||| ||||||||  ||||||||||    
T  26955433 gtgttaactcggtcaaactcgacaaacttttcgattttacca 26955392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 232
Target Start/End: Complemental strand, 32889979 - 32889942
Alignment:
Q  195 aaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  32889979 aaactcgtcaaaccttctgattttaccagaaattgagt 32889942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 21486612 - 21486576
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattt 217  Q
    |||||| || |||||||||||||||||||||||||||    
T  21486612 gtgttacctaggtcaaactcgtcaaactttctgattt 21486576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 23170738 - 23170766
Alignment:
Q  182 tgttaactcggtcaaactcgtcaaacttt 210  Q
    |||||||||||||||||||||||||||||    
T  23170738 tgttaactcggtcaaactcgtcaaacttt 23170766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 25843004 - 25843044
Alignment:
Q  182 tgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    ||||||||||||||| ||| |||||||||||||||| ||||    
T  25843004 tgttaactcggtcaatctcttcaaactttctgatttcacca 25843044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 54341695 - 54341643
Alignment:
Q  174 ttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||| ||||||||||| |||| ||   |||||||||||||    
T  54341695 ttaccgagtgttaactcagtcaaactcgttaaacctttcaattttaccagaaa 54341643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 28622991 - 28623222
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaa-tgggccaaaaacaat 99  Q
    |||||||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  28622991 tgatatgaaatgtttcacttaagtaagttgaaacgtgttgtaaagctagaaagtaaatatgttt-catttgggcttgaaaaaaaatgggccaaaaacaat 28623089  T
Q  100 gggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaact 199  Q
    |||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28623090 gggccatttttgaagaaaaaaaaatacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaact 28623189  T
Q  200 cgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||   |||||||||||||||||||    
T  28623190 cgtcaaactttgcaattttaccagaaatcgagt 28623222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 37797942 - 37798175
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37797942 tgatatgaaatgtttcacttcagtaagctgaaacgtgttgtaaagctagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatg 37798041  T
Q  101 ggccatttttgaag---nnnnnnnnntacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaa 197  Q
    ||||| ||||||||            ||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37798042 ggcca-ttttgaagagaaaaaaaaaatacaggagtaaactcacaaaaacagtaaactcacccgatttcacacgagtttaccgagtgttaactcggtcaaa 37798140  T
Q  198 ctcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||  ||||||||||||||| ||||    
T  37798141 ctcgtcaaacttttcgattttaccagaaattgagt 37798175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 7125055 - 7125220
Alignment:
Q  68 tttgggcttgaaaaaaatgggccaaaaacaat-gggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaa-acggtaaactcgcccgatttc 165  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||         || |||||||||||||||||| ||||||||||||||||||||     
T  7125055 tttgggcttgaaaaaaatgggccaaaaaaaaaagggccatttttgaagaaaaaaaa-tataggagtaaactcgcaaaaaacggtaaactcgcccgatttt 7125153  T
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7125154 acacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagt 7125220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 5651158 - 5651242
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||   |||| ||||||||||||||    
T  5651158 gtaaactcggccgattttacacgagtttactgagtgttaactcggtcaaactcgtcaaacttttcaatttcaccagaaatcgagt 5651242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 1151932 - 1151992
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  1151932 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 1151992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 4240107 - 4240167
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||  ||||||||||| |||| ||| ||||||||||||||    
T  4240107 acacgagtttaccgagtgttaactttgtcaaactcgttaaaccttccgattttaccagaaa 4240167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 13999735 - 13999795
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  13999735 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 13999795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 37014415 - 37014355
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||   |||||||||||||    
T  37014415 acacgagtttaccgagtgttaactcggtcaaactcgttaaacctttcaattttaccagaaa 37014355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 39852931 - 39852867
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  ||||||||| |||||||    
T  39852931 acacgagtttaccgagtgttaactccgtcaaactcgttaaaccttccaattttaccaaaaatcga 39852867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 1460790 - 1460853
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||| ||||||||||| || | ||| |||||||||||||| |||||    
T  1460790 cgagtttaccgagtgttaactcagtcaaactcgttaagccttccgattttaccagaaaccgagt 1460853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 21238763 - 21238814
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  21238763 gtgttaactcggtcaaactcgtcaaactttccgattttaccaaaaaccgagt 21238814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 29716780 - 29716842
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatc 228  Q
    ||||||||||||| |||||| || || || |||||||||||| ||||||||||||||||||||    
T  29716780 acacgagtttaccaagtgttcacccgatccaactcgtcaaaccttctgattttaccagaaatc 29716842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 33892831 - 33892897
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| |  ||||||||||||||||||||||||||||||| ||||| | || |||||||||    
T  33892831 acacgagtttaacacgtgttaactcggtcaaactcgtcaaactttccgatttcatcaaaaatcgagt 33892897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 5949672 - 5949612
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||| ||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  5949672 acacgtgtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 5949612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 2675078 - 2675129
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||  ||||| |||| |||||||||    
T  2675078 gtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaatcgagt 2675129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 13926492 - 13926432
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||  ||||||||| | |||| |||  |||||||||||||    
T  13926492 acacgagtttaccgagtgttaacttagtcaaactccttaaaccttccaattttaccagaaa 13926432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 40013346 - 40013406
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||| || || |||| |||  |||||||||||||    
T  40013346 acacgagtttaccgagtgttaactcagtcaatcttgttaaaccttccaattttaccagaaa 40013406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 5651061 - 5651117
Alignment:
Q  38 ttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaa 95  Q
    |||||||| ||||||||| | || |||||||||||||||||||| |||||||| ||||    
T  5651061 ttgtaaagctagaaagtagaaat-ttttcatttgggcttgaaaataatgggccgaaaa 5651117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 4549899 - 4549959
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||| | |||| ||||||| ||||||||||| |||| |||  |||||||||||||    
T  4549899 acacgagtttgcagagtattaactcagtcaaactcgttaaaccttccaattttaccagaaa 4549959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 26 - 232
Target Start/End: Original strand, 18899778 - 18899983
Alignment:
Q  26 agctgaaacgtgttgtaaagttagaaagtaaatatgttttcatttgggcttgaaaaaaatgggccaaaaacaatgggccatttttgaagnnnnnnnnnta 125  Q
    |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||         ||    
T  18899778 agcttaaacgtgttgtaaagctagaaagtaaatatgttt-catttgggcttgaaaaaaatgggccaaaaacaatgggccatttttgaagaaaaaaaaata 18899876  T
Q  126 caggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaa 225  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||    
T  18899877 ctggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttactagaa 18899976  T
Q  226 atcgagt 232  Q
    |||||||    
T  18899977 atcgagt 18899983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 38295707 - 38295767
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38295707 acacgagtttaccgagtgttaactcggtcaaactcgtcaaaccttctgattttaccagaaa 38295767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 18727636 - 18727702
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||||||| ||||||    
T  18727636 acacgagtttatcgaatgttaactcggtgaaactcgtcaaactttttgattttaccagaattcgagt 18727702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 31847207 - 31847273
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||||| ||||    
T  31847207 acacgagtttaccgagtgttaattcggtcgaactcgtcaaaccttctgattttatcagaaatagagt 31847273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 18177832 - 18177772
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||||||    
T  18177832 acacgagtttaccgagtgttaactctgtcaaactcgttaaactttccaattttaccagaaa 18177772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 35404311 - 35404374
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||| ||||||||||||||||||||||||||||||||||  ||||||||| ||| |||||    
T  35404311 cgagtttatcgagtgttaactcggtcaaactcgtcaaactttccaattttaccaaaaaccgagt 35404374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 2308703 - 2308759
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  2308703 acacgattttaccgagtgttaacttggtcaaacttgtcaaactttttgattttacca 2308759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 28739935 - 28739995
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  28739935 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 28739995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 43825401 - 43825341
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  43825401 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 43825341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 13898573 - 13898522
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  13898573 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagt 13898522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 14039190 - 14039139
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  14039190 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagt 14039139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 6224222 - 6224284
Alignment:
Q  170 gagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||| ||||||||||| |||| ||| |||||||| ||||| |||||    
T  6224222 gagtttaccgagtgttaactcagtcaaactcgttaaaccttccgattttactagaaaccgagt 6224284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 13833060 - 13833126
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||| |||||||| || |||  |||||||||||| |||||| ||||    
T  13833060 acacgagtttaccgagtgttaactcagtcaaacttgttaaatcttctgattttactagaaattgagt 13833126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 43318766 - 43318816
Alignment:
Q  182 tgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||||||| |||||||||| |||| ||||    
T  43318766 tgttaactcggtcaaactcgtcaaactttccgattttaccaaaaatagagt 43318816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 3575399 - 3575342
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  3575399 cgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 3575342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 15224329 - 15224276
Alignment:
Q  179 gagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||    
T  15224329 gagtgttaattcggtcaaactcgtcaaacttttcgatttcaccagaaatcgagt 15224276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 7027464 - 7027404
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||   |||||||||||||    
T  7027464 acacgagtttaccgagtgttaactcagtcaaactcgttaaacctttcaattttaccagaaa 7027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 28845146 - 28845086
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||| ||||||    
T  28845146 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttatcagaaa 28845086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 33262962 - 33262899
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||  |||||||||| |||||||||||||||||||| ||||| |||| ||| |||||    
T  33262962 cgagtttaccacgtgttaactcagtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 33262899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 38413458 - 38413509
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||| |||||    
T  38413458 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 38413509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 33136177 - 33136111
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||| |||||||||||||||||||  |||||| |||| |||| ||| |||| |||||||||||||||    
T  33136177 acacaagtttaccgagtgttaacttagtcaaattcgttaaaccttccgattataccagaaatcgagt 33136111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 43079051 - 43078985
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| |||||||||||||  |||||||||| |||| ||| ||||||| |||||| |||||    
T  43079051 acacgagtttatcgagtgttaactcaatcaaactcgttaaaccttcggattttaacagaaaccgagt 43078985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 19948635 - 19948594
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    ||||||||||||||||||||||||||||||| ||||| ||||    
T  19948635 gtgttaactcggtcaaactcgtcaaactttccgatttcacca 19948594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 24025963 - 24025894
Alignment:
Q  163 ttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||| |  |||||||||| ||| || ||||||||| |||||||||||||| ||| |||||    
T  24025963 ttcacacgagtttaacacgtgttaactcagtccaattcgtcaaacattctgattttaccaaaaaccgagt 24025894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 232
Target Start/End: Complemental strand, 40829766 - 40829682
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaac-tttctgattttaccagaaatcgagt 232  Q
    |||||||||  ||| || ||| |||||||  ||||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||    
T  40829766 gtaaactcggtcgagtttacatgagtttattgagtgttaactcggtcaaattcgtcaaacctttct-attttaccagaaaccgagt 40829682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 10657991 - 10657927
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    ||||||||||| ||||||||||||| || |||||||| |||| |||  ||||||||| |||||||    
T  10657991 acacgagtttatcgagtgttaactcagttaaactcgttaaaccttccaattttaccaaaaatcga 10657927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 15224426 - 15224378
Alignment:
Q  62 ttttcatttgggcttgaaaaaaatgggccaaaaacaatgggccattttt 110  Q
    |||||||||||||||||||| |||||||| |||| ||||||||| ||||    
T  15224426 ttttcatttgggcttgaaaataatgggccgaaaaaaatgggccaatttt 15224378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 26789346 - 26789286
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||| | ||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  26789346 acacgagtttatcaagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 26789286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 41978934 - 41978898
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattt 217  Q
    ||||||||||||||||||||||||||||||| |||||    
T  41978934 gtgttaactcggtcaaactcgtcaaactttccgattt 41978898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 3991870 - 3991819
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||  ||||| |||| ||| |||||    
T  3991870 gtgttaactcggtcaaactcgtcaaacttttcgatttcaccaaaaaccgagt 3991819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18899726 - 18899769
Alignment:
Q  1 tgatatgaaatgtttcacttcagtgagctgaaa-cgtgttgtaa 43  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  18899726 tgatatgaaatgtttcacttcagtaagctgaaaccgtgttgtaa 18899769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 34342347 - 34342284
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||| |||||||||  || |||||||||||| ||| || ||||||||||| |||||    
T  34342347 cgagtttaccgactgttaactcaatctaactcgtcaaaccttccgagtttaccagaaaccgagt 34342284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 45161137 - 45161188
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||| |||||||||||||||| ||||| |||| ||| |||||    
T  45161137 gtgttaactcggtcgaactcgtcaaactttccgatttcaccaaaaaccgagt 45161188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 15926474 - 15926424
Alignment:
Q  183 gttaactcg-gtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  15926474 gttaactcgagtcaaactcgtcaaacattgcgattttaccagaaatcgagt 15926424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 25288724 - 25288658
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| |||||||||||||  |||||| ||| |||| ||| |||||||| ||||| |||||    
T  25288724 acacgagtttatcgagtgttaactcaatcaaacccgttaaaccttccgattttactagaaaccgagt 25288658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 379487 - 379438
Alignment:
Q  170 gagtttaccgagtgttaactcggtcaaactcgtcaaactttctgatttta 219  Q
    ||||||||||||||||||||| ||||||||||| || | ||| |||||||    
T  379487 gagtttaccgagtgttaactcagtcaaactcgttaagccttccgatttta 379438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 2103580 - 2103532
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattt 217  Q
    |||||||| | |||||||||||| |||||||| |||||| |||||||||    
T  2103580 cgagtttatcaagtgttaactcgctcaaactcatcaaacattctgattt 2103532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 1463560 - 1463725
Alignment:
Q  68 tttgggcttgaaaaaaatgggccaaaaacaat--gggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaa-acggtaaactcgcccgattt 164  Q
    |||||||||||||||||||||||||||| ||   |||||||||||||||         ||||||||||||||||||||| ||||||||||||||||||||    
T  1463560 tttgggcttgaaaaaaatgggccaaaaaaaaaaagggccatttttgaagaaaaaaa--tacaggagtaaactcgcaaaaaacggtaaactcgcccgattt 1463657  T
Q  165 cacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
     |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1463658 tacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttaccagaaatcgagt 1463725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 6788255 - 6788146
Alignment:
Q  124 tacaggagtaaactcgcaaaaa-cggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttacca 222  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  6788255 tacaggagtaaactcgcaaaaaacggtaaactcgcccgattttacacgagtttactgagtgttaactcggtcaaactcgtcaaactttccgattttacca 6788156  T
Q  223 gaaatcgagt 232  Q
    ||||||||||    
T  6788155 gaaatcgagt 6788146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 10113726 - 10113834
Alignment:
Q  124 tacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccag 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||| ||||||||||     
T  10113726 tacaggagtaaactcgcaaaaacggtaaactcgcccgatttcacacgagtttactgagtctaaactcggtcaaactcgtcaaactttccgattttaccaa 10113825  T
Q  224 aaatcgagt 232  Q
    ||| |||||    
T  10113826 aaaacgagt 10113834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 31975643 - 31975706
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  31975643 cgagtttaccgagtcttaactcggtcaaactcgtcaaaccttccgattttacaagaaatcgagt 31975706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 2607003 - 2606941
Alignment:
Q  170 gagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||  |||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  2607003 gagtttattgagtgttaactcggtcaaactcatcaaaccttctgattttaccagaaatcgagt 2606941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 3000370 - 3000288
Alignment:
Q  148 gtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    ||||||||  ||||||| |||||||||||  ||||||||||||| ||||||||||||||||| | |||||||||| |||||||    
T  3000370 gtaaactcagccgattttacacgagtttattgagtgttaactcgatcaaactcgtcaaacttcccgattttaccataaatcga 3000288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 149 - 232
Target Start/End: Complemental strand, 16438835 - 16438752
Alignment:
Q  149 taaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||  ||| || |||||||||||||||||| ||||||| | ||||||||||||| ||| ||||||||||||| ||||||    
T  16438835 taaactcgatcgagtttacacgagtttaccgagtgctaactcgattaaactcgtcaaaccttccgattttaccagaagtcgagt 16438752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 24194546 - 24194469
Alignment:
Q  146 cggtaaactcgcccgatttcacacgagtttaccgagtgttaactcggtcaa-actcgtcaaactttctgattttacca 222  Q
    |||||||||||   || || ||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  24194546 cggtaaactcgattgaatttacacgagtttaccgagtgttaactcggtcaatactcgtcaaactttccaattttacca 24194469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 31896197 - 31896137
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  31896197 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 31896137  T

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Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 34773945 - 34773885
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  34773945 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 34773885  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 31996251 - 31996302
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  31996251 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagt 31996302  T

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Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 21199650 - 21199600
Alignment:
Q  182 tgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  21199650 tgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagt 21199600  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 4200095 - 4200152
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  4200095 cgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 4200152  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 31067989 - 31067932
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    |||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||    
T  31067989 cgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaa 31067932  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 30384705 - 30384765
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaa 226  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  |||||| ||||||    
T  30384705 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttatcagaaa 30384765  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 14262087 - 14262141
Alignment:
Q  176 accgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    ||||||||||||||| ||||||||||| |||| |||  |||||||||||||||||    
T  14262087 accgagtgttaactcagtcaaactcgttaaaccttccaattttaccagaaatcga 14262141  T

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Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 31535068 - 31535114
Alignment:
Q  186 aactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||| ||  ||||||||||||||||||||    
T  31535068 aactcggtcaaactcgtcaaacctttcgattttaccagaaatcgagt 31535114  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 8779586 - 8779635
Alignment:
Q  183 gttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||| ||||||||||||||||||||| ||||| |||| ||| |||||    
T  8779586 gttaacttggtcaaactcgtcaaactttccgatttcaccaaaaaccgagt 8779635  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 7497656 - 7497592
Alignment:
Q  169 cgagtttac-cgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||| |||||||||||||  |||||||||| |||| |||  ||||||||||||| |||||    
T  7497656 cgagtttacacgagtgttaactcaatcaaactcgttaaaccttccaattttaccagaaaccgagt 7497592  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 13461459 - 13461419
Alignment:
Q  192 gtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||| |||||||||||||| ||| |||||    
T  13461459 gtcaaactcgtcaaacattctgattttaccaaaaaccgagt 13461419  T

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Target: scaffold0263 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 359 - 489
Alignment:
Q  68 tttgggcttgaaaaaaatgggccaaaaacaatgggccatttttgaagnnnnnnnnntacaggagtaaactcgcaaaa-acggtaaactcgcccgatttca 166  Q
    |||| ||||||||||||||||||||||| || |||||||||||||||         ||||||||||||||||||||| |||||||||||||||||||| |    
T  359 tttgagcttgaaaaaaatgggccaaaaaaaaagggccatttttgaaggaaaaaaa-tacaggagtaaactcgcaaaaaacggtaaactcgcccgatttta 457  T
Q  167 cacgagtttaccgagtgttaactcggtcaaac 198  Q
    ||||||||||  ||||||||||||||||||||    
T  458 cacgagtttagtgagtgttaactcggtcaaac 489  T

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Target: scaffold1128 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 893 - 959
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  893 acacgagtttactaagtgttaactcggtcaaactcatcaaactttccgattttaccagaaaccgagt 959  T

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Target: scaffold0543 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 11085 - 11021
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcga 230  Q
    ||||||||||||||||||||||||| ||||||||||| |||| |||  ||||||||| |||||||    
T  11085 acacgagtttaccgagtgttaactcagtcaaactcgttaaaccttccaattttaccaaaaatcga 11021  T

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Target: scaffold0421 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 1796 - 1745
Alignment:
Q  181 gtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  1796 gtgttaactcggtcaaactcgtcaaactttccgatttcaccaaaaatcgagt 1745  T

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Target: scaffold0013 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 89389 - 89326
Alignment:
Q  170 gagtttac-cgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||| |||||||||||||| ||||||||||||||| |||  |||||||||||||||||||    
T  89389 gagtttacacgagtgttaactcgatcaaactcgtcaaaccttccaattttaccagaaatcgagt 89326  T

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Target: scaffold0042 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 57705 - 57771
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||||||||||||||||||  |||||||| | |||| |||||||||||| ||||| |||||    
T  57705 acacgagtttaccgagtgttaactcaatcaaactcattaaaccttctgattttactagaaaccgagt 57771  T

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Target: scaffold0383 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 16673 - 16736
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||| ||||||||||| ||||||||||| |||| ||  |||||||||||||| |||||    
T  16673 cgagtttaccaagtgttaactcagtcaaactcgttaaacctttcgattttaccagaaaccgagt 16736  T

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Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 20909 - 20972
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||| ||||||||||| ||||||||||| |||| ||  |||||||||||||| |||||    
T  20909 cgagtttaccaagtgttaactcagtcaaactcgttaaacctttcgattttaccagaaaccgagt 20972  T

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Target: scaffold0152; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 28892 - 28829
Alignment:
Q  169 cgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    |||||||||| ||||||||||| ||||||||||| |||| ||  |||||||||||||| |||||    
T  28892 cgagtttaccaagtgttaactcagtcaaactcgttaaacctttcgattttaccagaaaccgagt 28829  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 39276 - 39342
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattttaccagaaatcgagt 232  Q
    ||||||||||| | |||| |||||| |||||||||||||||| ||  |||||||||||||| |||||    
T  39276 acacgagtttatcaagtgctaactcagtcaaactcgtcaaacctttcgattttaccagaaaccgagt 39342  T

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Target: scaffold0246 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 1479 - 1428
Alignment:
Q  166 acacgagtttaccgagtgttaactcggtcaaactcgtcaaactttctgattt 217  Q
    ||||||||||| |  ||||||||||||| ||||||||||||||||| |||||    
T  1479 acacgagtttaacacgtgttaactcggttaaactcgtcaaactttccgattt 1428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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