View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_high_8 (Length: 435)
Name: NF15567_high_8
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 3661169 - 3661574
Alignment:
| Q |
14 |
atatattcatcgtttctctaatctctactactattatgtgagcataaatacaaaactcaagcaaaaatacccatatttggtagtggaatattattattct |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3661169 |
atatattcattgtttctctaatctctactactattatgtgagcataaatacaaaactcaagcaaaaatacccatatttggtagtggaatattattattct |
3661268 |
T |
|
| Q |
114 |
ttggatagaaaatgggatcaaagagggactcaccagtgaatgttatgtttggatggctgaggaaaagatcaatgaaagtgaagatctttttgggaatatt |
213 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3661269 |
ttggatagaaaatgggatcaaagagggattcaccggtgaatgttatgtttggatggctgaggaaaagatcaatgaaagtgaagatctttttgggaatatt |
3661368 |
T |
|
| Q |
214 |
gcttgctttttgtgctattgtggttctaaagcatactatcagagagccaaattttttcttcaaagcctctgaaacagtccatattattggccttattgtc |
313 |
Q |
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| T |
3661369 |
gcttgctttttgtgctattgtggttctaaagcatactatcagagagccaaattttttcttcaaagcctctgaaacagtccatattattggccttattgtc |
3661468 |
T |
|
| Q |
314 |
ctcatatacaagctttatgttcacaagagttgttctggtatgtttcataatttcttgtcatcaattccatattgtcttgttctttatttgccttgaggat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3661469 |
ctcatatacaagctttatgttcacaagagttgttctggtaagtttcataatttcttgtcatcaattccatattgtcttgttctttttttgccttgaggat |
3661568 |
T |
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| Q |
414 |
caatgg |
419 |
Q |
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| T |
3661569 |
caatgg |
3661574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 122 - 368
Target Start/End: Original strand, 3675643 - 3675889
Alignment:
| Q |
122 |
aaaatgggatcaaagagggactcaccagtgaatgttatgtttggatggctgaggaaaagatcaatgaaagtgaagatctttttgggaatattgcttgctt |
221 |
Q |
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|||||||||||||||||||| || || ||||||||| ||| | |||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
3675643 |
aaaatgggatcaaagagggattcccctgtgaatgttttgtctatatggttgaggaagagatcaatgaaagtgaaaatctttttgggaatattgcttgcat |
3675742 |
T |
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| Q |
222 |
tttgtgctattgtggttctaaagcatactatcagagagccaaattttttcttcaaagcctctgaaacagtccatattattggccttattgtcctcatata |
321 |
Q |
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||| |||| | |||| ||||||| ||| |||||||| ||||||||||||||| ||| ||||||||| ||||||| |||||||||||||||||||||| |
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| T |
3675743 |
tttctgctttggtggctctaaagtttaccatcagagatccaaattttttcttccaagtatctgaaacaatccatatcgttggccttattgtcctcatata |
3675842 |
T |
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| Q |
322 |
caagctttatgttcacaagagttgttctggtatgtttcataatttct |
368 |
Q |
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| T |
3675843 |
caagctctatgctcagaagacttgctctggtaagttttttaatttct |
3675889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 122 - 327
Target Start/End: Original strand, 3683080 - 3683285
Alignment:
| Q |
122 |
aaaatgggatcaaagagggactcaccagtgaatgttatgtttggatggctgaggaaaagatcaatgaaagtgaagatctttttgggaatattgcttgctt |
221 |
Q |
| |
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|||||||||||||||||||| | ||||||||||| || |||||||| |||| || || |||||||||||||||||||| ||||||||||||||||||| |
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| T |
3683080 |
aaaatgggatcaaagagggattttgcagtgaatgttttgattggatggttgagtaagaggtcaatgaaagtgaagatcttgttgggaatattgcttgctt |
3683179 |
T |
|
| Q |
222 |
tttgtgctattgtggttctaaagcatactatcagagagccaaattttttcttcaaagcctctgaaacagtccatattattggccttattgtcctcatata |
321 |
Q |
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|||||||| | ||| |||||||||||||||||| ||| || ||||||||| || |||||||| | || ||||||||||||||||| | ||||| |||| |
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| T |
3683180 |
tttgtgctgtggtgattctaaagcatactatcacagaccctcattttttctacatagcctctggatcaatccatattattggccttgtagtccttgtata |
3683279 |
T |
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| Q |
322 |
caagct |
327 |
Q |
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|||||| |
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| T |
3683280 |
caagct |
3683285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 122 - 368
Target Start/End: Original strand, 3666177 - 3666423
Alignment:
| Q |
122 |
aaaatgggatcaaagagggactcaccagtgaatgttatgtttggatggctgaggaaaagatcaatgaaagtgaagatctttttgggaatattgcttgctt |
221 |
Q |
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|||||||||||||||| ||| || || |||||||| ||| | | ||| ||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
3666177 |
aaaatgggatcaaagaaggattctcccgtgaatgtattgtctagctggttgaggaataggtcaatgaaagtgaagatctttttgggaatattgcttgctt |
3666276 |
T |
|
| Q |
222 |
tttgtgctattgtggttctaaagcatactatcagagagccaaattttttcttcaaagcctctgaaacagtccatattattggccttattgtcctcatata |
321 |
Q |
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|||||||| | ||| ||| ||| ||||||| ||| | | | || |||| || |||||| | ||| |||||||| |||| ||| ||| ||||||||| |
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| T |
3666277 |
tttgtgctgtggtgactctcaagttaactatcaaagatctagaattattctacatagcctcaaacacaatccatattcttggtctttttgccctcatata |
3666376 |
T |
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| Q |
322 |
caagctttatgttcacaagagttgttctggtatgtttcataatttct |
368 |
Q |
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||||| |||||||||||| ||| ||||||| |||| |||||||| |
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| T |
3666377 |
taagctctatgttcacaagtcttgctctggtaaatttcttaatttct |
3666423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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