View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_1 (Length: 878)
Name: NF15567_low_1
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 625; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 208 - 864
Target Start/End: Original strand, 24991043 - 24991699
Alignment:
| Q |
208 |
tgtttatgaacatcatcagtatcacatacctgctaacacccctaaaccttgaacttctcttcacagtggttgcagtggattgaccagtcactggctgctg |
307 |
Q |
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| T |
24991043 |
tgtttatgaacatcatcagtatcacatacctgctaacacccctaaaccttgaacttctcttcacagtggttgcagtggattgaccactcactggctgctg |
24991142 |
T |
|
| Q |
308 |
tatttctgatacatcgccttgttgttcattgccacctaacacagatgattctcttcgccgccttttaacagatttagtagttacaacagaatcagtatcc |
407 |
Q |
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| T |
24991143 |
tatttctgatacatcgccttgttgttcattgccacctaataccgatgattctcttcgccgccttttaacagatttagtagttacaacagaatcagtatcc |
24991242 |
T |
|
| Q |
408 |
agcatgagcaatctatgacttcttggacttagttcagatttcacattggaaacctcctccattgatcaatacccttcactttcttcgcagtcaagttaat |
507 |
Q |
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| T |
24991243 |
agcatgagcaatctatgacttcttggacttagttcagatttcacattggaaacctcctccattgatcaatactcttcactttcttcgcagtcaagttaat |
24991342 |
T |
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| Q |
508 |
agacaaatacttcaacttactgaaaacaatatatgtaaatggttcaagctgtgacttcacttttataagctacaacaagtttgttacatgcttatgttgt |
607 |
Q |
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| T |
24991343 |
agacaaatacttcaacttactgaaaacaatatatgtaaatggttcaagctgtgacttcacttttataagctacaagaagtttgttacatgcttatgttgt |
24991442 |
T |
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| Q |
608 |
ctttttgctgttttaacttgttttgggaaaaaagacagaattgtcgataataacaataccttaaaacaaatgtaattttgccaacatcacaaaaacccaa |
707 |
Q |
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| T |
24991443 |
ctttttgctgttttaacttgttttgggaaaaaagacagaattgtcgataataactataccttaaaacaaatgtaattttgccaacatcacaaaaacccaa |
24991542 |
T |
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| Q |
708 |
gaatctgcagcaaaaagcttattattatttgagctataaaacataattaacttatccattttaatgtaagacaatgtttgtttcagaactatccagaact |
807 |
Q |
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| T |
24991543 |
gaatctgcagcaaagagcttattattatttgagctataaaacataattaacttatccattttaatgtaagacaatgtttgcttcagaactatccagaact |
24991642 |
T |
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| Q |
808 |
ttgctttggtataatcaaagtctacaaaagtttactgaatttggtcacttccatatg |
864 |
Q |
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| T |
24991643 |
ttgctttggtataatcaaagtctacaaaagtttactgaatttggtcacttccatatg |
24991699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 24990863 - 24991014
Alignment:
| Q |
23 |
cactaccggatatgacctcga-actaacattggtatgtcggcattgataatgattt--aaattttaattaattctaaattggtaatcataatatgtgtcg |
119 |
Q |
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| T |
24990863 |
cactaccggatatggcattgatactaacattggtatgtcggcattgataatgatttgaaaaatataattaatt--------gtaatcataataagtgtcg |
24990954 |
T |
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| Q |
120 |
gtgtcagacaacgaacaacaaaccttctatcacaagtgtcggtgttacagacctaacaat |
179 |
Q |
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| T |
24990955 |
gtgtcagacaacgaacaacaaaccttctatcacaagtgtcggtgttacagagctaacaat |
24991014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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