View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15567_low_10 (Length: 466)
Name: NF15567_low_10
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 34 - 447
Target Start/End: Complemental strand, 35551466 - 35551066
Alignment:
| Q |
34 |
attattctgagttagtataggcacaaaaatgacattgaaggaaaaaacaggaaaatatagaacattggtaaggtaaagggaactaataaatcgttggtga |
133 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35551466 |
attattctgtgttagtataggcacaaaaatgagattgaaggaaaaaacaggaaaatatagaacattggtaaggtaaagggaactaataaatcgttggtga |
35551367 |
T |
|
| Q |
134 |
atctcgacggtcgttccacatgttcgctgcaacaaacagctgcaatcctcgcgttgtgatatttctggcacctagattcctttaggaataggttgggaat |
233 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35551366 |
atctcgacggtcgttccacatgtttgctgcaa-------------tcctcacgttgtgatatttctggcacctagattcctttaggaataggttgggaat |
35551280 |
T |
|
| Q |
234 |
tgacccttgttaattcggaatggaaagaaagattccagaaagaaaaatatattggaaaatagaaaggaaggctgagaggctccagtaacaatctcctatt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35551279 |
tgacccttgttaattcggaatggaaagaaagattccagaaagaaaaagatattgaaaaatagaaaggaaggctgagaggctccagtaacaatctcctatt |
35551180 |
T |
|
| Q |
334 |
agccagttggctccccaagaatttatagagtgaaaggtaaaccaaggacgtgtgagatgttattgaatcgaaaatctcgatgaaaccatttggtgatttg |
433 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35551179 |
agccagttggctctccaagaatttgtagagtgaaaggtaaaccaaggacgtgtgagatgttattgaatcgaaaatctcgatgaaaccatttggtgatttg |
35551080 |
T |
|
| Q |
434 |
atttggataagttt |
447 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35551079 |
atttggataagttt |
35551066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 232 - 346
Target Start/End: Complemental strand, 19294194 - 19294080
Alignment:
| Q |
232 |
attgacccttgttaattcggaatggaaagaaagattccagaaagaaaaatatattggaaaatagaaaggaaggctgagaggctccagtaacaatctccta |
331 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19294194 |
attggcccttgttaattcggaatggaaagaaagattccagaaagaaaaagatcttggaaaatagaaaggaaggctgagaggctccagtaaagatctccta |
19294095 |
T |
|
| Q |
332 |
ttagccagttggctc |
346 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
19294094 |
ttagccatttggctc |
19294080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 215
Target Start/End: Complemental strand, 19294326 - 19294223
Alignment:
| Q |
109 |
aagggaactaataaatcgttggtgaatctcgacggtcgttccacatgttcgctgcaacaaacagctgcaatcctcgcgttgtgatatttctggcacctag |
208 |
Q |
| |
|
|||||||||||||| | || || |||||||||||| ||||| || || ||||| ||||||||||||||||||| | ||||||||| |||||||| | |
|
|
| T |
19294326 |
aagggaactaataacttgtgggcgaatctcgacggatgttccgcacgt---ctgcagcaaacagctgcaatcctcgtgccgtgatatttgtggcacctcg |
19294230 |
T |
|
| Q |
209 |
attcctt |
215 |
Q |
| |
|
|| |||| |
|
|
| T |
19294229 |
atccctt |
19294223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 13040626 - 13040685
Alignment:
| Q |
244 |
taattcggaatggaaagaaagattccagaaagaaaaatatattggaaaatagaaaggaag |
303 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||||| | || ||||||||||||||||||| |
|
|
| T |
13040626 |
taattcggaagggaaaaaaagattccataaagaaacagatcttggaaaatagaaaggaag |
13040685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University