View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_13 (Length: 415)
Name: NF15567_low_13
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_13 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 2 - 415
Target Start/End: Complemental strand, 475637 - 475207
Alignment:
| Q |
2 |
catcttccgctgtaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaactcacatgaagcataagcatcagttaattag |
101 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
475637 |
catcttccgctttaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcaagctaactcacatgaagcataagcatcagttaattag |
475538 |
T |
|
| Q |
102 |
attaataatttaagttgtaa-tgttcaaattaatctttatttttagaacataaatattagtaccttcaaatgtatatttcctcatgaagcaacaagacag |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
475537 |
attaataatttaagttgtaaatgttcaaattaatctttatttttagaacataaatattagtaccttccaatgtatatttcctcatgaagcaacaagacag |
475438 |
T |
|
| Q |
201 |
ccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatgcttggagacaaaatacaactgc |
300 |
Q |
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| T |
475437 |
ccaatatagtcacaagaattgttaagagaggactaaacactgcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaaatgc |
475338 |
T |
|
| Q |
301 |
agaccccataattccctgcaaaatgtatttacttattacaaattaagccactcaatgtgtattaatt---aatatatacaa-------------atcatg |
384 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| |
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| T |
475337 |
agaccccataattccctgcaaaatgtatttatttattacaaattaggccactcaatgtgtattaattaataatatatacaagtattgttgtatcatcatg |
475238 |
T |
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| Q |
385 |
gaaaatatgggcatactgcatataaagcgca |
415 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
475237 |
gaaaatatgggcatactgcatataaagcgca |
475207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 2 - 341
Target Start/End: Complemental strand, 457976 - 457632
Alignment:
| Q |
2 |
catcttccgctgtaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaact-cacatgaagcataagcatcagttaatta |
100 |
Q |
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||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||| ||||| ||| ||| |
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| T |
457976 |
catcttcagctttaccccaaagcacagtatacaagccaatgatcactccaattgcgcctattaagctaaaaacacatgaatcataaacatcatttagtta |
457877 |
T |
|
| Q |
101 |
gattaataatttaagttgtaatgttcaaattaatctttatttttagaacataaatattagtaccttcaaatgtatatttcctcatgaagcaaca----ag |
196 |
Q |
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|| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || || |
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| T |
457876 |
gactaataattcaagttgtaatgttcaaattaatatttatttttagaacataaatattagtaccttccaatgtatatttcctcatgaagcagcaaggcag |
457777 |
T |
|
| Q |
197 |
acagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatgcttggagacaaaatacaa |
296 |
Q |
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|||| | ||||||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
457776 |
gcagctagtatagtcacaatcactgttaagagaggattaaacattgcagagaagagaggtcctctctttgtaatgcaccatgcttggagacaaaatacaa |
457677 |
T |
|
| Q |
297 |
ctgcagaccccataattccctgcaaaatgtatttacttattacaa |
341 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
457676 |
atgcagaccccataattccctgcaaaatgtatttatttattacaa |
457632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 128 - 352
Target Start/End: Complemental strand, 449553 - 449333
Alignment:
| Q |
128 |
aattaatctttatttttagaacataaatattagtaccttcaaatgtatatttcctcatgaagcaacaagacagccaatatagtcacaagaattgtcaaga |
227 |
Q |
| |
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|||||||| | ||| ||||||| ||||||||| ||||||| ||||||| ||||||||||| |||||| |||||||| |||||||| ||||| || |
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| T |
449553 |
aattaatcatcattgttagaacttaaatattaataccttccggtgtatatctcctcatgaagaaacaaggaagccaatacagtcacaattattgtgttga |
449454 |
T |
|
| Q |
228 |
gaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatgcttggagacaaaatacaactgcagaccccataattccctgcaaaatgta |
327 |
Q |
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| T |
449453 |
gaggactaaacattgcagagaagagaggtcctctctttttaatgcaccatgcttggagacaaaataaaactgctgatcccataattccctgaaaaatata |
449354 |
T |
|
| Q |
328 |
tttacttattacaaattaagccact |
352 |
Q |
| |
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| |||||||||||||||||||| |
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| T |
449353 |
t----ttattacaaattaagccact |
449333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 161 - 333
Target Start/End: Complemental strand, 480939 - 480767
Alignment:
| Q |
161 |
taccttcaaatgtatatttcctcatgaagcaacaagacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctc |
260 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||| |||| |||||||| | ||| || |||||| |||||| ||||||||||||||||||| |
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| T |
480939 |
taccttccaatgtatatttcctcatgaagcaacaagatagcaaatacagtcacaattaatgtgaaaagaggattaaacatagcagagaagagaggtcctc |
480840 |
T |
|
| Q |
261 |
tctttgcaatgcaccatgcttggagacaaaatacaactgcagaccccataattccctgcaaaatgtatttact |
333 |
Q |
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|||||| ||||||||||||||| ||| | ||| |||||||| ||||| ||||||| ||||||||| ||||| |
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| T |
480839 |
tctttgaaatgcaccatgcttgaagatagaatgttactgcagatcccatgattccctacaaaatgtaattact |
480767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 4 - 326
Target Start/End: Complemental strand, 469088 - 468757
Alignment:
| Q |
4 |
tcttccgctgtaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgctaactcacatgaagcataagcatcagttaattagat |
103 |
Q |
| |
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||||| ||| |||||||||| || | |||||| |||||||||||||||||||| ||||||| |||||| ||||||||| | ||| |||| ||| |||||| |
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| T |
469088 |
tcttcagctttaccccaaagtacaatatacaaaccaatgatcactccaattgcacctatcaagctaacacacatgaagtagaagaatcatttagttagat |
468989 |
T |
|
| Q |
104 |
taataat------ttaagttgtaa---tgttcaaattaatctttatttttagaacataaatattagtaccttcaaatgtatatttcctcatgaagcaaca |
194 |
Q |
| |
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||||||| |||| || | |||| | | | |||||| | | | || ||| ||||| ||||||| |||||||||||||||||||||||| | |
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| T |
468988 |
taataataattgattaaattcaatatgtgttaagaatcttctttaatatcacaagttaattattactaccttccaatgtatatttcctcatgaagcaaaa |
468889 |
T |
|
| Q |
195 |
agacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagaggtcctctctttgcaatgcaccatgcttggagacaaaatac |
294 |
Q |
| |
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| ||||||||| ||| || |||||| || | |||| |||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |
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| T |
468888 |
tggcagccaatacagtacaaataattgtgaaaacaggagtaaacatagcagagaagagaggtcctctccttgaaatgcaccatgcttggagacagtatat |
468789 |
T |
|
| Q |
295 |
aactgcagaccccataattccctgcaaaatgt |
326 |
Q |
| |
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|||||||| ||||||| |||||||||||||| |
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| T |
468788 |
tactgcagatcccataactccctgcaaaatgt |
468757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 449678 - 449620
Alignment:
| Q |
4 |
tcttccgctgtaccccaaagcacgacatacaagccaatgatcactccaattgcgcctat |
62 |
Q |
| |
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||||| ||| |||||||||| || | ||||||||||||||||||||||||||||||||| |
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| T |
449678 |
tcttcagctttaccccaaagtacaatatacaagccaatgatcactccaattgcgcctat |
449620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 155 - 331
Target Start/End: Original strand, 27489790 - 27489966
Alignment:
| Q |
155 |
tattagtaccttcaaatgtatatttcctcatgaagcaacaagacagccaatatagtcacaagaattgtcaagagaggactaaacactgcagagaagagag |
254 |
Q |
| |
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||||| ||||||| |||||||| |||||||||||||||||| ||||| |||| |||||||| | ||| | | |||| |||||| |||||||| |||| |
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| T |
27489790 |
tattactaccttccaatgtatacttcctcatgaagcaacaaaacagctaatacagtcacaattaatgtggaaacaggagtaaacatagcagagaatagag |
27489889 |
T |
|
| Q |
255 |
gtcctctctttgcaatgcaccatgcttggagacaaaatacaactgcagaccccataattccctgcaaaatgtattta |
331 |
Q |
| |
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||||||| ||| ||||||||||||||||||||| || | ||||| || ||||||| ||||| ||||||||||||| |
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| T |
27489890 |
gtcctcttcttgaaatgcaccatgcttggagacacaaggctactgcggatcccataactccctacaaaatgtattta |
27489966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 27489303 - 27489411
Alignment:
| Q |
2 |
catcttccgctgtaccccaaagcacgacatacaagccaatgatcactccaattgcgcctatcatgc--taactcacatgaagcataagcatcagttaatt |
99 |
Q |
| |
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||||||| ||| | |||||||| || | ||||||||||||||||||||||||||| ||||||| || |||| |||||||||| ||| |||| ||| || |
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| T |
27489303 |
catcttcagcttttccccaaagaacaatatacaagccaatgatcactccaattgcacctatcaagctataacaaacatgaagcagaagaatcatttagtt |
27489402 |
T |
|
| Q |
100 |
agattaata |
108 |
Q |
| |
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||||||||| |
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| T |
27489403 |
agattaata |
27489411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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