View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15567_low_14 (Length: 411)

Name: NF15567_low_14
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15567_low_14
NF15567_low_14
[»] chr6 (7 HSPs)
chr6 (236-375)||(27924599-27924742)
chr6 (233-399)||(28005549-28005719)
chr6 (286-370)||(144388-144472)
chr6 (286-370)||(152409-152493)
chr6 (245-290)||(32376897-32376942)
chr6 (233-290)||(34939764-34939821)
chr6 (236-276)||(1019606-1019646)
[»] chr7 (3 HSPs)
chr7 (289-368)||(37146489-37146568)
chr7 (246-290)||(24363607-24363651)
chr7 (236-276)||(47134753-47134793)
[»] chr2 (2 HSPs)
chr2 (286-370)||(24326572-24326656)
chr2 (249-290)||(11488297-11488338)
[»] chr3 (3 HSPs)
chr3 (234-290)||(24785225-24785281)
chr3 (233-285)||(54180773-54180825)
chr3 (13-59)||(38257931-38257977)
[»] chr1 (5 HSPs)
chr1 (233-285)||(27963363-27963415)
chr1 (231-290)||(12477278-12477337)
chr1 (237-290)||(16981933-16981986)
chr1 (233-290)||(27140498-27140555)
chr1 (236-276)||(28262615-28262655)
[»] chr5 (1 HSPs)
chr5 (234-276)||(13194835-13194877)
[»] chr4 (2 HSPs)
chr4 (246-290)||(5131256-5131300)
chr4 (246-290)||(53673664-53673708)


Alignment Details
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 236 - 375
Target Start/End: Original strand, 27924599 - 27924742
Alignment:
Q  236 cttataacacgtccataagttgtttttagcttatttac-----atagtctctccaggataaatacaaggctaggctggtagttaaagactataagcaaga 330  Q
    ||||||||||||||||||||| ||||||||||||||||     |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  27924599 cttataacacgtccataagttatttttagcttatttacattacatagtctctctaggataaatacaaggctaggctggtagttaaaggctataagcaaga 27924698  T
Q  331 gtatgaggttgattataaagaggtatttgctccggtggctatact 375  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||    
T  27924699 gtatggggttgattataaagagttattt-ctccggtggctatact 27924742  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 233 - 399
Target Start/End: Original strand, 28005549 - 28005719
Alignment:
Q  233 cagcttataacacgtccataagttgtttttagcttatttacatagtctctccaggataaatacaaggctaggct----ggtagttaaagactataagcaa 328  Q
    ||||||||||||||| |||||||  ||||||||||||||||||| || ||| ||||||||||||||||||||||    ||||||||||| ||||||||||    
T  28005549 cagcttataacacgtacataagtgctttttagcttatttacataatcactctaggataaatacaaggctaggctagctggtagttaaaggctataagcaa 28005648  T
Q  329 gagtatgaggttgattataaagaggtatttgctccggtggctatactcgatacaattatagtggttctttc 399  Q
    || |||| |||||| ||||||||||||| |||||||||||||||||| || ||||||||| ||||| ||||    
T  28005649 gaatatggggttgactataaagaggtatatgctccggtggctatacttgacacaattatattggttatttc 28005719  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 144388 - 144472
Alignment:
Q  286 ggataaatacaaggctaggctggtagttaaagactataagcaagagtatgaggttgattataaagaggtatttgctccggtggct 370  Q
    |||||||||||||||| | || |||||||||| ||||||||| || || | ||| |||||||||||||||||||||| |||||||    
T  144388 ggataaatacaaggctcgactagtagttaaaggctataagcaggaatacggggtcgattataaagaggtatttgctctggtggct 144472  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 152409 - 152493
Alignment:
Q  286 ggataaatacaaggctaggctggtagttaaagactataagcaagagtatgaggttgattataaagaggtatttgctccggtggct 370  Q
    |||||||||||||||| | || |||||||||| ||||||||| || || | ||| |||||||||||||||||||||| |||||||    
T  152409 ggataaatacaaggctcgactagtagttaaaggctataagcaggaatacggggtcgattataaagaggtatttgctctggtggct 152493  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 32376897 - 32376942
Alignment:
Q  245 cgtccataagttgtttttagcttatttacatagtctctccaggata 290  Q
    ||||||||| ||||||||||||||||| || || ||||||||||||    
T  32376897 cgtccataaattgtttttagcttatttccaaaggctctccaggata 32376942  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 34939821 - 34939764
Alignment:
Q  233 cagcttataacacgtccataagttgtttttagcttatttacatagtctctccaggata 290  Q
    |||||||| ||| |||||||| ||||||| ||||||||| ||||  ||||||||||||    
T  34939821 cagcttatgacatgtccataaattgttttcagcttatttccataaactctccaggata 34939764  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 1019606 - 1019646
Alignment:
Q  236 cttataacacgtccataagttgtttttagcttatttacata 276  Q
    ||||||||| ||| |||||||||||||||||||||| ||||    
T  1019606 cttataacatgtctataagttgtttttagcttatttccata 1019646  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 289 - 368
Target Start/End: Original strand, 37146489 - 37146568
Alignment:
Q  289 taaatacaaggctaggctggtagttaaagactataagcaagagtatgaggttgattataaagaggtatttgctccggtgg 368  Q
    ||||||||||||| |||| |||||||||| |||||||||||| |||| ||||||||||||||||||||||||| ||||||    
T  37146489 taaatacaaggctcggctagtagttaaaggctataagcaagaatatggggttgattataaagaggtatttgctacggtgg 37146568  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 24363607 - 24363651
Alignment:
Q  246 gtccataagttgtttttagcttatttacatagtctctccaggata 290  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||||    
T  24363607 gtccataagttgttttcagcttatttccataacctctccaggata 24363651  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 47134753 - 47134793
Alignment:
Q  236 cttataacacgtccataagttgtttttagcttatttacata 276  Q
    ||||| |||||||||||||||||||| ||||||||| ||||    
T  47134753 cttatgacacgtccataagttgttttcagcttattttcata 47134793  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 370
Target Start/End: Original strand, 24326572 - 24326656
Alignment:
Q  286 ggataaatacaaggctaggctggtagttaaagactataagcaagagtatgaggttgattataaagaggtatttgctccggtggct 370  Q
    ||||||||| |||||| | |||||||||||||  |||||||| || || | ||| ||||||||||||||||||||||||||||||    
T  24326572 ggataaatataaggctcgactggtagttaaagggtataagcaggaatacggggtcgattataaagaggtatttgctccggtggct 24326656  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 11488338 - 11488297
Alignment:
Q  249 cataagttgtttttagcttatttacatagtctctccaggata 290  Q
    ||||||||||||| ||||||||| |||| |||||||||||||    
T  11488338 cataagttgttttcagcttatttgcataatctctccaggata 11488297  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 290
Target Start/End: Complemental strand, 24785281 - 24785225
Alignment:
Q  234 agcttataacacgtccataagttgtttttagcttatttacatagtctctccaggata 290  Q
    ||||||| ||| || ||||||||||||||||||||||||||||  ||||| ||||||    
T  24785281 agcttatgacatgttcataagttgtttttagcttatttacataagctctcgaggata 24785225  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 54180773 - 54180825
Alignment:
Q  233 cagcttataacacgtccataagttgtttttagcttatttacatagtctctcca 285  Q
    |||||||| ||| ||||||||||||||||||||||||||| |||  |||||||    
T  54180773 cagcttatgacatgtccataagttgtttttagcttatttatataagctctcca 54180825  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 38257931 - 38257977
Alignment:
Q  13 gaagaaaatattaaacgtggatgtaaaagccaggatttggtcaaata 59  Q
    |||||||||| |||||||||| |||||||||||| | ||||||||||    
T  38257931 gaagaaaataataaacgtggaggtaaaagccaggctgtggtcaaata 38257977  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 285
Target Start/End: Original strand, 27963363 - 27963415
Alignment:
Q  233 cagcttataacacgtccataagttgtttttagcttatttacatagtctctcca 285  Q
    |||||||| ||| ||||||||||||||||||||||||||| |||  |||||||    
T  27963363 cagcttatgacatgtccataagttgtttttagcttatttatataagctctcca 27963415  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 12477278 - 12477337
Alignment:
Q  231 agcagcttataacacgtccataagttgtttttagcttatttacatagtctctccaggata 290  Q
    |||||||||| ||| |||||||||||||||| ||||||||| ||||  ||||||| ||||    
T  12477278 agcagcttatgacatgtccataagttgttttcagcttatttccatacactctccatgata 12477337  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 16981933 - 16981986
Alignment:
Q  237 ttataacacgtccataagttgtttttagcttatttacatagtctctccaggata 290  Q
    |||| ||| ||||||||||||||||||||||||||| |||  ||||||| ||||    
T  16981933 ttatgacatgtccataagttgtttttagcttatttatataagctctccatgata 16981986  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 27140555 - 27140498
Alignment:
Q  233 cagcttataacacgtccataagttgtttttagcttatttacatagtctctccaggata 290  Q
    |||||||| ||| |||||||||||||||| ||||||||| ||||  ||||||| ||||    
T  27140555 cagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgata 27140498  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 28262615 - 28262655
Alignment:
Q  236 cttataacacgtccataagttgtttttagcttatttacata 276  Q
    ||||||||| |||||||| ||||||||||||||||| ||||    
T  28262615 cttataacatgtccataaattgtttttagcttatttccata 28262655  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 13194877 - 13194835
Alignment:
Q  234 agcttataacacgtccataagttgtttttagcttatttacata 276  Q
    ||||||||||| ||||||| |||||||||||||||||| ||||    
T  13194877 agcttataacatgtccatatgttgtttttagcttatttccata 13194835  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 5131256 - 5131300
Alignment:
Q  246 gtccataagttgtttttagcttatttacatagtctctccaggata 290  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||||    
T  5131256 gtccataagttgttttcagcttatttccataagctctccaggata 5131300  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Original strand, 53673664 - 53673708
Alignment:
Q  246 gtccataagttgtttttagcttatttacatagtctctccaggata 290  Q
    |||||||||||||||| ||||||||||||||  ||||||| ||||    
T  53673664 gtccataagttgttttcagcttatttacataagctctccaagata 53673708  T

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