View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15567_low_17 (Length: 354)
Name: NF15567_low_17
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 21 - 338
Target Start/End: Original strand, 15182048 - 15182365
Alignment:
| Q |
21 |
ggtagctgtgtgttattcggtaagtacaaacttaagaaaattaagaacatgttagtgatgtaaaatttgaacctgttaatctttaatccacaatatttga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15182048 |
ggtagctgtgtgttattcggtaagtacaaacttaagaaaattaagaacatgttagtgatgtaaaatttgaacctgttaatctttaatccacaatatttga |
15182147 |
T |
|
| Q |
121 |
acctagacctataaaggcatcacaactttaaaaacggtatttatgaactataatttaaccaatgtggagactttgtggttgtttcatttataggcaattt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15182148 |
acctagacctataaaggcatcacaactttaaaaacggtatttatgaactataatttaaccaatgtggagactttgtggttgtttcatttataggcaattt |
15182247 |
T |
|
| Q |
221 |
gtgtggtatcaatgaggagtgttgtatacacatgggcattccgtaagaaaggaccaatatatgtagctatgttcaaccctttaggaatggtcattgcact |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15182248 |
gtgtggtatcaatgaggagtgttgtatacacatgggcattccgtaagaaaggaccaatatatgtagctatgttcaacccattaggaatggtcattgcact |
15182347 |
T |
|
| Q |
321 |
tggtatgggggtaatatt |
338 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
15182348 |
tggcatgggggtaatatt |
15182365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 15192179 - 15192306
Alignment:
| Q |
203 |
ttcatttataggcaatttgtgtggtatcaatgaggagtgttgtatacacatgggcattccgtaagaaaggaccaatatatgtagctatgttcaacccttt |
302 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||||||||||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15192179 |
ttcatttataggcaatatttgtggtatcattgaggagtgttgtaaacaaatgggcatttcgtaaaaaaggaccaatatatgtagctatgttcaacccttt |
15192278 |
T |
|
| Q |
303 |
aggaatggtcattgcacttggtatgggg |
330 |
Q |
| |
|
| || |||||||||||||||| |||||| |
|
|
| T |
15192279 |
aagagtggtcattgcacttggcatgggg |
15192306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 204 - 338
Target Start/End: Original strand, 15210997 - 15211131
Alignment:
| Q |
204 |
tcatttataggcaatttgtgtggtatcaatgaggagtgttgtatacacatgggcattccgtaagaaaggaccaatatatgtagctatgttcaacccttta |
303 |
Q |
| |
|
|||||||||||||| || ||||| |||| ||| || |||| || | |||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15210997 |
tcatttataggcaacttttgtggaatcattgaagaatgttatacagacatgggcatgtcgtaagaaaggaccaatatatgtagctatgttcaaaccttta |
15211096 |
T |
|
| Q |
304 |
ggaatggtcattgcacttggtatgggggtaatatt |
338 |
Q |
| |
|
|| |||||||||||||| | |||||||||||||| |
|
|
| T |
15211097 |
agagtggtcattgcacttagcatgggggtaatatt |
15211131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 222 - 338
Target Start/End: Original strand, 15204728 - 15204845
Alignment:
| Q |
222 |
tgtggtatcaatgaggagtgttgtatacacatgggcattccgtaagaaaggaccaatatatgtagctatgttcaaccctttaggaatggtcattgcactt |
321 |
Q |
| |
|
|||||||||| | |||| ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| |
|
|
| T |
15204728 |
tgtggtatcattaaggaatgttgtaaacacatgggcatgtcgtaagaaaggaccaatatatgtagctaccttcaaccctttaagagtggtcattgcactt |
15204827 |
T |
|
| Q |
322 |
ggtatg-ggggtaatatt |
338 |
Q |
| |
|
|| ||| ||||||||||| |
|
|
| T |
15204828 |
ggcatgcggggtaatatt |
15204845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University