View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15567_low_2 (Length: 848)
Name: NF15567_low_2
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 650; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 650; E-Value: 0
Query Start/End: Original strand, 167 - 820
Target Start/End: Original strand, 35915557 - 35916210
Alignment:
| Q |
167 |
acttaccaccacttcaacggcgcggcgaggcaacgcaagacggcccccgcttgcttgctgcctcagccatcatcattttcatcaaattaaaattaacact |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35915557 |
acttaccaccacttcaacggcgcggcgaggcaacgcaagacggcccccgcttgcttgctgcctcagccatcatcattttcatcaaattaaaattaacact |
35915656 |
T |
|
| Q |
267 |
ttcaatctgttgttaaagatatacaataattatttgtagctatgaacaaagaagagcaaaagtgtgacaaaatgtcattatcttcatcttcttctccgct |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35915657 |
ttcaatctgttgttaaagatatacaataattatttgtagctatgaacaaagaagagcaaaagtgtgacaaaatgtcattatcttcatcttcttctccgct |
35915756 |
T |
|
| Q |
367 |
accaagcgaatcagaggaggagttgcagcacatgccattggcgccggtggcgtggaacaataggaggaggctatcgaagcagctatcgatgtgcgagaag |
466 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35915757 |
accaagcgaatcggaggaggagttgcagcacatgccattggcgccggtggcgtggaacaataggaggaggctatcgaagcagctatcgatgtgcgagaag |
35915856 |
T |
|
| Q |
467 |
ccgagagatatggcttgggagagaaggaggagacaagaaataaggaggagtattgttcaagattgtgtttgtgatgatataactgatgatgatttgcatg |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35915857 |
ccgagagatatggcttgggagagaaggaggagacaagaaataaggaggagtattgttcaagattgtgtttgtgatgatataactgatgatgatttgcatg |
35915956 |
T |
|
| Q |
567 |
aacttaaaggatgcattgaacttgggtttggattcaatgaagaagatggtcagagattgtgtaatacattgcctgcccttgatctttattttgctgttaa |
666 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35915957 |
aacttaaaggatgcattgaacttgggtttggattcaatgaagaagatggtcagagattgtgtaatacattgcctgcccttgatctttattttgctgttaa |
35916056 |
T |
|
| Q |
667 |
tagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgcttcatcccttggggctcgttcttcttcctttggaagccctagaagtgatgctgac |
766 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35916057 |
tagaggtttgtcaccaagccctgtttctacacctcaaagtcgtgcttcatcccttggggctcgttcttcttcctttggaagccctagaagtgatgctgac |
35916156 |
T |
|
| Q |
767 |
tcatggaagatttgtagcccaggttaactttctttgcatttttcttaacaatca |
820 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35916157 |
tcatggaagatttgtagcccaggttaactttctttgcatttttcttaacaatca |
35916210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 35915408 - 35915505
Alignment:
| Q |
18 |
atattgctcctaaaattttggtgctgacggttacaaacgtatggtagaatatacaacaccaaccataaaaccctccattaatagaacacatcaaatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35915408 |
atattgctcctaaaattttggtgctgacggttacaaacgtatggtagaatatacaacaccaaccataaaaccctccattaatagaacacatcaaatac |
35915505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University