View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_20 (Length: 337)
Name: NF15567_low_20
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_20 |
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| [»] scaffold0302 (1 HSPs) |
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Alignment Details
Target: scaffold0302 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 49 - 331
Target Start/End: Complemental strand, 19233 - 18950
Alignment:
| Q |
49 |
aaagagaaaacagtgaactctcttatagtttcatgagagaagctggagtatacac--ggtcatatttacaatatttattgtattaggattcaggggcaat |
146 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||||| | |
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| T |
19233 |
aaagagaaaacaatgaactctcttatagtttcatgagagaagctggagtatacacacgatcatatttacaatatt-attgtattaggatttaggggcact |
19135 |
T |
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| Q |
147 |
tttgtcttttcgcccaaaaattgagcccattctctcgttttcggtcctattgagcgcggaaaggattttgaggtgggacctagccaaatctttctttcca |
246 |
Q |
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| T |
19134 |
tttgtcttttcgcccaaaaattgagcccattctcccgctttccgtccaattgagcgcgtaaaggattttggggtgggtcccagctaaatctttctttcca |
19035 |
T |
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| Q |
247 |
ttaccttttcatatttattccaaactatggaaactcaatccttccatcctctttccctcccttcactatctttccttcttctctc |
331 |
Q |
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| T |
19034 |
ttacctttttatatttgttccaaacaatggaaactcaatccttcgatcctctttccctcccttcacgatctttccttcttctctc |
18950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 49 - 331
Target Start/End: Complemental strand, 12856696 - 12856413
Alignment:
| Q |
49 |
aaagagaaaacagtgaactctcttatagtttcatgagagaagctggagtatacac--ggtcatatttacaatatttattgtattaggattcaggggcaat |
146 |
Q |
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| T |
12856696 |
aaagagaaaacaatgaactctcttctagtttcatgagagaagctggagtatacacacgggcatatttacaatatt-attgtattaggatttaggggcact |
12856598 |
T |
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| Q |
147 |
tttgtcttttcgcccaaaaattgagcccattctctcgttttcggtcctattgagcgcggaaaggattttgaggtgggacctagccaaatctttctttcca |
246 |
Q |
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| T |
12856597 |
tttgtcttttcgcccaaaaattgagcccattctcccactttccgtccaattgagcgcggaaaggattttggggtgggtcccagctaaatctttctttcca |
12856498 |
T |
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| Q |
247 |
ttaccttttcatatttattccaaactatggaaactcaatccttccatcctctttccctcccttcactatctttccttcttctctc |
331 |
Q |
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| T |
12856497 |
ttacctttttatatttgttccaaacaatggaaactcaatccttccatcctttttccctcccttcacaatctttccttcttctctc |
12856413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Original strand, 50373624 - 50373664
Alignment:
| Q |
288 |
ttccatcctctttccctcccttcactatctttccttcttct |
328 |
Q |
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| T |
50373624 |
ttccatcatctttccctcccatcacaatctttccttcttct |
50373664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 323
Target Start/End: Original strand, 20257806 - 20257991
Alignment:
| Q |
138 |
aggggcaattttgtcttttcgcccaaaaattgagcccattctctcgttttcggtcctattgagcgcggaaaggattttgaggtgggacctagccaaatct |
237 |
Q |
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||||||| ||||||||||| || ||||||||||| |||||||| | |||| |||| |||||||| |||||||||||| |||||| || | ||||| || |
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| T |
20257806 |
aggggcacttttgtctttttgctcaaaaattgagtccattctcccactttcagtccaattgagcgtggaaaggattttttggtgggccccaaccaaaact |
20257905 |
T |
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| Q |
238 |
ttctttccattaccttttcatatttattccaaactatggaaactcaatccttccatcctctttccctcccttcactatctttcctt |
323 |
Q |
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| T |
20257906 |
ttctttccttgacctttttatatttgttcaaaaccatggaaacacaatccttccatcctctttacctcccttcactatctttcctt |
20257991 |
T |
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