View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_25 (Length: 318)
Name: NF15567_low_25
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_25 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 3294565 - 3294863
Alignment:
| Q |
20 |
cccttaactcaaatgcaaagtttaagttagtgtaaatgagtaagtgttaaattcattcatttttgcatccatgtgggtgtgaatgagtgtaagatcctag |
119 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3294565 |
cccttgactcaaatgcaaagtttaagttagtgtaaatgagtaagtgttaaattctttcatttttgcatccatgtcggtgtgaatgagtgtaagatcctag |
3294664 |
T |
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| Q |
120 |
tattttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttatctttattttga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3294665 |
tattttctttaaacgtatacacacatattttattctatctatgtttaagtctattttatttttattatcattgaaatagtaaactttatctttattttga |
3294764 |
T |
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| Q |
220 |
gatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaattaccatttttactttcaatttgtgttacttgagtgtgtgtcatgccct |
318 |
Q |
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| T |
3294765 |
gatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaattaccatttttactttcaatttgtgttacttgagtgtgtgtcatgccct |
3294863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 49496851 - 49496895
Alignment:
| Q |
224 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
269 |
Q |
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| T |
49496851 |
ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa |
49496895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 109 - 269
Target Start/End: Complemental strand, 28502999 - 28502839
Alignment:
| Q |
109 |
taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
28502999 |
taagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtgtactttatttttattatcatttaaatagtaaacattac |
28502900 |
T |
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| Q |
209 |
ctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
269 |
Q |
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| || |||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||| |
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| T |
28502899 |
ccttttttttagatcttctagtttcgaggatgaaactatttttaagggggtaataatgtaa |
28502839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 19710448 - 19710404
Alignment:
| Q |
224 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
269 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
19710448 |
ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa |
19710404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 122 - 269
Target Start/End: Complemental strand, 51444547 - 51444399
Alignment:
| Q |
122 |
ttttctttaaacgtatacacacatattttattctatctatgtttaagtctactttatttttattatcatttaaatagtaaactttatctttatttt-gag |
220 |
Q |
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||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||| ||| | |||||||||| ||||| | ||||||||| ||| |
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| T |
51444547 |
ttttctttaaaaatatgtatacatattttattctatctatatttaagtctactttattttcattcttgtttaaatagtgaacttgacctttattttagag |
51444448 |
T |
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| Q |
221 |
atcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
269 |
Q |
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||||| |||||||| |||||||| ||| |||||||||||||||||||| |
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| T |
51444447 |
atcttttagtttcggggacgaaattatttttaagggggtaataatgtaa |
51444399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 24274818 - 24274862
Alignment:
| Q |
224 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
269 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
24274818 |
ttctagtttcgaggacgaaactatt-ttaagggggtaataatgtaa |
24274862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 10531113 - 10531045
Alignment:
| Q |
202 |
actttatctttattttgagatcttctagtttcgaggacgaaacaattcttaagggggtaataatgtaat |
270 |
Q |
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| T |
10531113 |
actttacctttattttgagagcttctagtttcgaggacgaaacaatttttaagggggtaataatgtaat |
10531045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 177
Target Start/End: Complemental strand, 10531181 - 10531108
Alignment:
| Q |
104 |
gagtgtaagatcctagtattttctttaaacgtatacacacatattttattctatctatgtttaagtctacttta |
177 |
Q |
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|||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||| ||||||| |
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| T |
10531181 |
gagtgtaagatcctagaattttctttaaacatatacatacatattttattctatctatgcttaagtttacttta |
10531108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0657 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Complemental strand, 5596 - 5552
Alignment:
| Q |
224 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
269 |
Q |
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||||||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
5596 |
ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa |
5552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 25003813 - 25003857
Alignment:
| Q |
224 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
269 |
Q |
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||||||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
25003813 |
ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa |
25003857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 34635177 - 34635221
Alignment:
| Q |
224 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
269 |
Q |
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|
||||||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
34635177 |
ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa |
34635221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 16473947 - 16473991
Alignment:
| Q |
224 |
ttctagtttcgaggacgaaacaattcttaagggggtaataatgtaa |
269 |
Q |
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||||||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
16473947 |
ttctagtttcgaggacgaaactatt-ttaagggggtaagaatgtaa |
16473991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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