View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_26 (Length: 311)
Name: NF15567_low_26
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_26 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 4840364 - 4840665
Alignment:
| Q |
11 |
cagagagctaattgttttttcccttgaatattttatacaaatccaaaagtata--acttagttgggatataaatagacgtggatttttactcacaataga |
108 |
Q |
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| T |
4840364 |
cagagagctaattgttttttcccttgaatattttatacaaatccaaaagtatataacttagttgggatataaatagacgtggatttttactcacaataga |
4840463 |
T |
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| Q |
109 |
tagactgatttttactcacaaatgctaaataatacaataatatataacaatgcctccaaaccactccagataaatacatcacacaaacaacacgatgatc |
208 |
Q |
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| T |
4840464 |
tagactgatttttactcacaaatgctaaataatacaataatatataacaatgcctccaaaccactccagataaatacatcagacaaacaatacgatgatc |
4840563 |
T |
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| Q |
209 |
ataaagttagacaataggaactgaacattcaatgtctcaagtctcaacatctcgaaaattaaagctaaagataaaaattgcaatatccaaatattttaga |
308 |
Q |
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| T |
4840564 |
ataaaatt-gacaataggaactgaacattcaatgtctcaagtctcaacatctcgaaaattaaagctaaagataaaaattacaatatccaaatattttaga |
4840662 |
T |
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| Q |
309 |
ctc |
311 |
Q |
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||| |
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| T |
4840663 |
ctc |
4840665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 128 - 311
Target Start/End: Complemental strand, 5175039 - 5174857
Alignment:
| Q |
128 |
aaatgctaaataatacaataatatataacaatgcctccaaaccactccagataaatacatcacacaaacaacacgatgatcataaagttagacaatagga |
227 |
Q |
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| T |
5175039 |
aaatgctaaataatacaataatatataacaatgcctccaaaccactccagataaatacatcacacaaacaacacgatgatcataaagtt-gacaaaagga |
5174941 |
T |
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| Q |
228 |
actgaacattcaatgtctcaagtctcaacatctcgaaaattaaagctaaagataaaaattgcaatatccaaatattttagactc |
311 |
Q |
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| T |
5174940 |
actgaacattcaatttctcaagtctcaacatctcgaaaattaaagctaaaggtaaaaattacaatatccaaatatttgagactc |
5174857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 5184336 - 5184292
Alignment:
| Q |
172 |
ctccagataaatacatcacacaaacaacacgatgatcataaagtt |
216 |
Q |
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| T |
5184336 |
ctccagataagtacatcacacaaacaacatgatgaacataaagtt |
5184292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 310
Target Start/End: Complemental strand, 5215796 - 5215750
Alignment:
| Q |
264 |
aaattaaagctaaagataaaaattgcaatatccaaatattttagact |
310 |
Q |
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| T |
5215796 |
aaattaaaggtaaatataaaaattacaatatccaaatatttgagact |
5215750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 23084038 - 23084120
Alignment:
| Q |
132 |
gctaaataatacaataatatataacaatgcctccaaaccactccagataaatacatcacacaaacaacacgatgatcataaag |
214 |
Q |
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| T |
23084038 |
gctaaacaatacaaaaatatataacaatagctgcaaaccactccagataagtatatgaaaaaaacaacaggatgcacataaag |
23084120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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