View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_28 (Length: 291)
Name: NF15567_low_28
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 272
Target Start/End: Complemental strand, 29205313 - 29205053
Alignment:
| Q |
12 |
tatttcgggtgccaaataatctggagtgccaactattgattcttgttgacgtgcctccctttttgaaacatgtcgaggttttggttcatcatcgactaaa |
111 |
Q |
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| T |
29205313 |
tatttcgggtgccaaataatctggagtgccaactattgattgttgttgacgtgcctccctttttgaaacatgtcgaggttttggttcatcatcgactaaa |
29205214 |
T |
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| Q |
112 |
aaaccattagtgaaagatgcgggtgctgataaatcctccgtgctgttgatgagaccaacttttgagagtccaaagtctgtcaactgtaataacaaggatt |
211 |
Q |
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| T |
29205213 |
aaaccattagtgaaagatgcgggtgctgataaatcctccgtgctgttgatgagaccaacttttgagagtccaaagtctgtcaactgtaataacaaggatt |
29205114 |
T |
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| Q |
212 |
aaacatttacaaaaagtgacgaggaagggacaagtatgtaaaagaatcgaatccatgtact |
272 |
Q |
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| T |
29205113 |
aaacatttacaaaaagtgacgaggaagggacaagtatgtaagagaatcgaatccatgtact |
29205053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 268
Target Start/End: Original strand, 12646562 - 12646818
Alignment:
| Q |
12 |
tatttcgggtgccaaataatctggagtgccaactattgattcttgttgacgtgcctccctttttgaaacatgtcgaggttttggttcatcatcgactaaa |
111 |
Q |
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| T |
12646562 |
tatttcgggtgccaaataatctggagtgccaactattgattgttgttgacgtgcctccctttttgaaacatgtcgaggttttggttcatcatcgactaaa |
12646661 |
T |
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| Q |
112 |
aaaccattagtgaaagatgcgggtgctgataaatcctccgtgctgttgatgagaccaacttttgagagtccaaagtctgtcaactgtaataacaaggatt |
211 |
Q |
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| T |
12646662 |
aaaccattagtgaaagatgcgggtgctgataaatcctccgtgctgttgatgagaccaacttttgagagtccaaagtctgtcaactgtaataacaaggatt |
12646761 |
T |
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| Q |
212 |
aaacatttacaaaaagtgacgaggaagggacaagtatgtaaaagaatcgaatccatg |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12646762 |
aaacatttacaaaaagtgacgaggaagggacaagtatgtaaaagaatcgaatccatg |
12646818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 197
Target Start/End: Complemental strand, 25381743 - 25381688
Alignment:
| Q |
142 |
aaatcctccgtgctgttgatgagaccaacttttgagagtccaaagtctgtcaactg |
197 |
Q |
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| T |
25381743 |
aaatcatccgtgctgttgatgagaccaacttttgaaagcccaaagtctgttaactg |
25381688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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