View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15567_low_3 (Length: 777)

Name: NF15567_low_3
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15567_low_3
NF15567_low_3
[»] chr2 (12 HSPs)
chr2 (19-392)||(15915747-15916120)
chr2 (477-762)||(15916246-15916531)
chr2 (61-284)||(15919556-15919779)
chr2 (499-760)||(36400417-36400679)
chr2 (593-720)||(5539775-5539902)
chr2 (347-390)||(15920379-15920422)
chr2 (620-671)||(33007695-33007746)
chr2 (46-136)||(42979452-42979539)
chr2 (53-139)||(37740000-37740085)
chr2 (52-140)||(886968-887052)
chr2 (45-145)||(18811372-18811469)
chr2 (94-139)||(32503250-32503294)
[»] chr4 (9 HSPs)
chr4 (496-762)||(18991844-18992111)
chr4 (46-169)||(11842353-11842472)
chr4 (46-166)||(55510214-55510332)
chr4 (47-149)||(45911325-45911423)
chr4 (638-752)||(48489190-48489305)
chr4 (593-753)||(5786302-5786463)
chr4 (77-170)||(18516552-18516640)
chr4 (78-113)||(34108360-34108395)
chr4 (116-163)||(45904660-45904707)
[»] chr5 (4 HSPs)
chr5 (618-763)||(16160225-16160371)
chr5 (72-170)||(18855678-18855773)
chr5 (52-139)||(4373675-4373760)
chr5 (76-154)||(33424896-33424972)
[»] chr7 (7 HSPs)
chr7 (538-753)||(13760796-13761011)
chr7 (535-753)||(35768908-35769127)
chr7 (622-751)||(13807939-13808069)
chr7 (620-667)||(9598590-9598637)
chr7 (620-667)||(9826161-9826208)
chr7 (52-98)||(30592303-30592349)
chr7 (88-149)||(21044906-21044966)
[»] scaffold0259 (1 HSPs)
scaffold0259 (546-757)||(4000-4212)
[»] chr8 (7 HSPs)
chr8 (622-750)||(38245975-38246104)
chr8 (46-168)||(38198130-38198248)
chr8 (119-170)||(34552676-34552727)
chr8 (73-164)||(9933311-9933401)
chr8 (119-170)||(27487105-27487156)
chr8 (53-139)||(37032430-37032514)
chr8 (649-753)||(12867905-12868010)
[»] chr3 (6 HSPs)
chr3 (622-754)||(3159598-3159731)
chr3 (618-671)||(15206039-15206092)
chr3 (52-170)||(54996761-54996871)
chr3 (618-671)||(15245105-15245158)
chr3 (52-154)||(651781-651881)
chr3 (52-98)||(18086030-18086076)
[»] scaffold0783 (1 HSPs)
scaffold0783 (88-154)||(6004-6069)
[»] chr1 (4 HSPs)
chr1 (620-671)||(22157819-22157870)
chr1 (651-764)||(14207304-14207418)
chr1 (52-139)||(40095042-40095128)
chr1 (73-142)||(50079490-50079557)
[»] scaffold0006 (1 HSPs)
scaffold0006 (88-154)||(81505-81570)
[»] chr6 (6 HSPs)
chr6 (660-764)||(19229407-19229512)
chr6 (614-658)||(24395694-24395738)
chr6 (52-139)||(4097621-4097707)
chr6 (116-170)||(1813994-1814048)
chr6 (619-665)||(21605318-21605364)
chr6 (52-132)||(16509331-16509408)
[»] scaffold0074 (1 HSPs)
scaffold0074 (614-658)||(25778-25822)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 392
Target Start/End: Original strand, 15915747 - 15916120
Alignment:
Q  19 ctaagagtatgtttttgaagagtgattgacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaa 118  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||||||| | ||||  ||||||||||||||||||||||||     
T  15915747 ctaagagtatgtttttgaagagtgaatgatatgcttttcttttttaaattaaagacaatataaaatatattttttaaaatgaattaagtatgattcaaa- 15915845  T
Q  119 tattatatgatcatttatcatattattctttcaattgttttaaaatatcaaaccaactccgaatttaccctaaaaatatttagaagtactcatctaataa 218  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  15915846 tattatatggtcatttatcatattattctttcaattgttttaaaatatcaaaccaactctgaacttaccctaaaaatatttaggagtactcatctaataa 15915945  T
Q  219 gttaaggggtcttattaaatggacattattcaagtctcttttgtgataattataaaatggtcattagtaccattgttattaataata-annnnnnnngga 317  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||          |||    
T  15915946 gttaaggggtcttattaaatggacattattcaaatctcttttgtgataattataaaa-ggtcattagtaccattgttattaataatattttttttttgga 15916044  T
Q  318 gtaataatgataataac-nnnnnnnaaagaaataattataacttcttcttccctaattaaattgtcttctagataa 392  Q
    |||||||||||||||||        | ||||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  15916045 gtaataatgataataacttttttttagagaaataataataacttcttcctccctaattaaactgtcttctagataa 15916120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 477 - 762
Target Start/End: Original strand, 15916246 - 15916531
Alignment:
Q  477 cattgtgatagcccatgagctctggtctaatatgtgaaattggttaggtatctcattggtgccttctgatgagtttcgacgccattttatttagttcatc 576  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||||||    
T  15916246 cattgtgatagcccatgagctctgatctaatatgtggaattggttaggtatctcatcggtgccttctaatgagtttcgatgtcattttatttagttcatc 15916345  T
Q  577 aaaatgacgggtttgtcaagaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtatttt 676  Q
    |||||||  ||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||| |||||| |||||||| |||||| |||||||||     
T  15916346 aaaatgataggtttgtcaagaatttctcatttatatttaacgataatttgatttgcaactctttgggtgatttagaaggaaatgaacaatcgtgtatttc 15916445  T
Q  677 aaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaatcttttttatggttgaaatctaaacaggcggcctttg 762  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  15916446 aaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaatctttcttatggttgaaatctaaacagacggcctttg 15916531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 61 - 284
Target Start/End: Original strand, 15919556 - 15919779
Alignment:
Q  61 tttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctt-tcaattgtttt 159  Q
    |||||||| || |||| ||||||| |||||||||||  |||| |||| |||||  |||||| |||||||||||||||||||| || ||   | || ||||    
T  15919556 tttaaattaaaaacaaaataaaatattttttaaaaac-gaataaagtgtgatt--aaatatcatatgatcatttatcatattttttttaatatttttttt 15919652  T
Q  160 aaaatatcaaaccaactccgaatttaccctaaaaa-ta-tttagaagtactcatctaataagttaaggggtcttattaaatggacattattcaagtctct 257  Q
    ||||||||||||||||||| || |||||||||||| || ||| || |||||||||||||||| |||| |||||| ||| ||||||||||||||| ||||     
T  15919653 aaaatatcaaaccaactcccaacttaccctaaaaagtattttggaggtactcatctaataagctaagaggtcttgttatatggacattattcaaatctca 15919752  T
Q  258 tttgtgataattataaaatggtcatta 284  Q
    |||||||||| ||||||||||||||||    
T  15919753 tttgtgataaatataaaatggtcatta 15919779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 499 - 760
Target Start/End: Complemental strand, 36400679 - 36400417
Alignment:
Q  499 tggtctaatatgtgaaattggttaggtatctcattggtgccttctgatgagtttcgacgccattttatttagttcatcaaaatgacgggtttgtcaagaa 598  Q
    ||||||||| || | ||||||||||| || || || ||||| |||| |||| || |||  ||||||||| |||| ||||| ||| | ||  || ||||||    
T  36400679 tggtctaatgtgcggaattggttaggcatttctttagtgccatctggtgagctttgacatcattttattcagtttatcaagatggcaggcatgccaagaa 36400580  T
Q  599 tttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttt 698  Q
     | | ||||||| | ||||  ||||||||||||||| ||||||| |||| |||||||| | ||| || ||||||||  ||||| || | |||| |||||     
T  36400579 ctacacatttatttttaactgtaatttggtttgcaactgtttgggtgatatggaaggagaggaataatcgtgtattccaaaatacgatatccaatccttc 36400480  T
Q  699 tattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatctaaacaggcggcctt 760  Q
     || |||| | | ||||| ||| | || || || |||||| ||||||||||||||| ||||||    
T  36400479 aatactcactgagaaagtcaagctaaattccttcttatggctgaaatctaaacaggtggcctt 36400417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 593 - 720
Target Start/End: Original strand, 5539775 - 5539902
Alignment:
Q  593 caagaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccac 692  Q
    ||||| ||||||||||||   | | |||||||||||||||    |||||| |||| ||||| |||||||| ||| |||| ||| ||||| |||| || |     
T  5539775 caagattttctcatttattcctcaggataatttggtttgcttccgtttgggtgatatggaaagaaaagaataactgtgtctttcaaaatacggtttctaa 5539874  T
Q  693 tccttttattctcattaaaaaagttaag 720  Q
    ||||| |||||||||| |||||||||||    
T  5539875 tccttctattctcattgaaaaagttaag 5539902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 390
Target Start/End: Original strand, 15920379 - 15920422
Alignment:
Q  347 aataattataacttcttcttccctaattaaattgtcttctagat 390  Q
    |||||| |||||||| |||||| |||||||||||||||||||||    
T  15920379 aataataataacttcatcttccttaattaaattgtcttctagat 15920422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 671
Target Start/End: Complemental strand, 33007746 - 33007695
Alignment:
Q  620 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgt 671  Q
    ||||||||||||||  ||||||| |||||||||||||||  |||||||||||    
T  33007746 taatttggtttgcatctgtttgggtgatttggaaggaaagaaacaaccgtgt 33007695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 42979539 - 42979452
Alignment:
Q  46 gacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttat 136  Q
    ||||||||||| | ||||||||| |||    ||||||||||||||  |||||||||| |||| ||||| |||||||||| |||||||||||    
T  42979539 gacttgcttttatattttaaattaaagttgctataaaatgttttt--aaaaatgaatcaagtgtgatt-aaaatattatgtgatcatttat 42979452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 37740085 - 37740000
Alignment:
Q  53 ttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 139  Q
    ||||||||||||||||  |||  |||||| |||||||||  ||||| |||||||| |||||  || |||||||||||| ||||||||    
T  37740085 ttttcttttttaaattccagattatataacatgttttttctaaaataaattaagtgtgatt-gaagtattatatgatcgtttatcat 37740000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 886968 - 887052
Alignment:
Q  52 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcata 140  Q
    |||||||||||||||||  | ||||||||||||| ||||| |||| | ||||| || ||||| ||  ||||||||||||||||||||||    
T  886968 cttttcttttttaaatt--acacaatataaaatgcttttttaaaa-taaattatgtgtgattgaag-tattatatgatcatttatcata 887052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 18811372 - 18811469
Alignment:
Q  45 tgacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattat 144  Q
    |||||| |||||||||||||||||  ||  | |||||| ||||||||  ||||| |||||||| |||||  ||||||||||||||  |||||||| ||||    
T  18811372 tgacttacttttcttttttaaattacagtaactataaagtgtttttt--aaaataaattaagtgtgatt-gaaatattatatgattgtttatcatgttat 18811468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 32503250 - 32503294
Alignment:
Q  94 aaaatgaattaagtatgattcaaaatattatatgatcatttatcat 139  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||    
T  32503250 aaaataaattaagtatgatt-aaaatattatatgattatttatcat 32503294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 7e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 496 - 762
Target Start/End: Original strand, 18991844 - 18992111
Alignment:
Q  496 ctctggtctaatatgtgaaattggttaggtatctcattggtgccttctgatgagtttcgacgccattttatttagttcatcaaaatgacgggtttgtcaa 595  Q
    |||||||||||| |||| || || |||||||| |||| ||| ||||||| |||  ||||||  ||||||||| |||| | ||| ||| ||||| || |||    
T  18991844 ctctggtctaatgtgtggaaatgattaggtatttcatcggtaccttctggtgatcttcgacaacattttattcagtttaccaatatggcgggtatgccaa 18991943  T
Q  596 gaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactcc 695  Q
    || |||||||||||||| |||  |||||||||||||||| ||||||  ||||| | |||||||||||||   |||||||| ||||| ||||||||||||     
T  18991944 gattttctcatttatatctaaaaataatttggtttgcaactgtttgagtgattggaaaggaaaagaacagttgtgtatttcaaaatacggtgtccactca 18992043  T
Q  696 ttttattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatctaaacaggcggcctttg 762  Q
    |||| |||||||  ||||||| ||||| || || || |||||||||||||||||| ||| ||||||||    
T  18992044 ttttcttctcatcgaaaaagtaaagttaaattcattcttatggttgaaatctaaataggtggcctttg 18992111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 11842353 - 11842472
Alignment:
Q  46 gacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattatt 145  Q
    ||||| ||||||||||| |||||  ||||| |||||||| |||||||||   |||||||||| ||||| ||  |||||||||||||||||||||||| |     
T  11842353 gacttacttttctttttcaaattacagacactataaaatattttttaaa---tgaattaagtctgattgaag-tattatatgatcatttatcatattgta 11842448  T
Q  146 ctttcaattgttttaaaatatcaa 169  Q
     |||||||| ||| ||||||||||    
T  11842449 atttcaattttttaaaaatatcaa 11842472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 166
Target Start/End: Original strand, 55510214 - 55510332
Alignment:
Q  46 gacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattatt 145  Q
    ||||| |||||| ||||||| || |||||||| ||||||||||||| |||| | |||||||| ||| | ||  ||||||||||||||| ||||| || ||    
T  55510214 gacttacttttcatttttaatttaaagacaatgtaaaatgtttttttaaaa-taaattaagtgtgactgaag-tattatatgatcattcatcatgttgtt 55510311  T
Q  146 ctttcaattgttttaaaatat 166  Q
     |||||||| |||||||||||    
T  55510312 atttcaatttttttaaaatat 55510332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 45911325 - 45911423
Alignment:
Q  47 acttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattc 146  Q
    |||| |||||||||||||||||   || | |||||||| |||||   ||||| |||||| | |||| |||||||||||||||| ||||||||||||||||    
T  45911325 acttacttttcttttttaaattacggatactataaaatattttt---aaaattaattaaatgtgat-caaaatattatatgattatttatcatattattc 45911420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 638 - 752
Target Start/End: Complemental strand, 48489305 - 48489190
Alignment:
Q  638 tttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaa-tcttttttatg 736  Q
    ||||| || ||||||||||||  |||||||| |||||| ||||| |||  |||||| ||||| |||||||| ||||||| ||| |||| |||||  | ||    
T  48489305 tttgggtgctttggaaggaaagaaacaaccgggtatttcaaaatacgggttccacttcttttgttctcattgaaaaagtaaagcttaattctttcctttg 48489206  T
Q  737 gttgaaatctaaacag 752  Q
    | ||||||||||||||    
T  48489205 gctgaaatctaaacag 48489190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 753
Target Start/End: Complemental strand, 5786463 - 5786302
Alignment:
Q  593 caagaatttctcatttatatataacgataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccac 692  Q
    ||||| |||||||||||||  | | |||||| |||||||||| | ||||| ||||||||||  ||| |||||||||| ||||  ||||| ||||  ||      
T  5786463 caagagtttctcatttatacttcaggataatatggtttgcaactatttgggtgatttggaaaaaaaggaacaaccgtatattcaaaaattcggtaaccgt 5786364  T
Q  693 tccttttattctcattaaaaaagttaag-tttaatcttttttatggttgaaatctaaacagg 753  Q
    ||||||| |||||||| | ||| ||||| || | || ||  | |||||||||||||||||||    
T  5786363 tccttttgttctcattgataaaattaagcttcattcattcctttggttgaaatctaaacagg 5786302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 18516640 - 18516552
Alignment:
Q  77 tataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 170  Q
    |||||||||||||| |||||||||||||||| |||||  ||  ||||| |||||||||||||   | |||||||| || |||||||||||||||    
T  18516640 tataaaatgttttt-aaaaaatgaattaagtgtgatt-gaagcattatgtgatcatttatca---tgttctttcattttttttaaaatatcaaa 18516552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 34108395 - 34108360
Alignment:
Q  78 ataaaatgttttttaaaaaatgaattaagtatgatt 113  Q
    ||||||||||||||||||||| ||||||||||||||    
T  34108395 ataaaatgttttttaaaaaataaattaagtatgatt 34108360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 163
Target Start/End: Original strand, 45904660 - 45904707
Alignment:
Q  116 aaatattatatgatcatttatcatattattctttcaattgttttaaaa 163  Q
    |||||||||||||| ||||||||||||||||||| |||  ||||||||    
T  45904660 aaatattatatgattatttatcatattattctttaaatgtttttaaaa 45904707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 618 - 763
Target Start/End: Original strand, 16160225 - 16160371
Alignment:
Q  618 gataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagtt 717  Q
    ||||||||||||||||| ||||||| |||||||||| |||| |||||||||||||||| ||||| | |||||||||||||||||||||||| | ||| ||    
T  16160225 gataatttggtttgcaactgtttgggtgatttggaaagaaatgaacaaccgtgtatttcaaaatacagtgtccactccttttattctcattgataaaatt 16160324  T
Q  718 aagtttaat-cttttttatggttgaaatctaaacaggcggcctttgc 763  Q
    ||| || || | || |||||| ||||||| ||||||| |||||||||    
T  16160325 aagcttcatccattcttatggctgaaatccaaacaggtggcctttgc 16160371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 18855678 - 18855773
Alignment:
Q  72 gacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 170  Q
    |||||||||||||| | ||  ||||||||||||||| ||||| ||  ||||||||||||||||||||| || ||||||||| | |||||||||||||||    
T  18855678 gacaatataaaatgctatt--aaaaatgaattaagtttgatttaag-tattatatgatcatttatcatgttgttctttcaaattttttaaaatatcaaa 18855773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 4373760 - 4373675
Alignment:
Q  52 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 139  Q
    |||||||||||||||||   ||| |||||| | |||||||||||| | |||||||| ||||| ||| |||||||||||||||||||||    
T  4373760 cttttcttttttaaattacggactatataacaagttttttaaaaa-taaattaagtgtgattgaaa-tattatatgatcatttatcat 4373675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 33424972 - 33424896
Alignment:
Q  76 atataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaatt 154  Q
    ||||||||||||||| | ||||| |||||| | ||||| ||| |||||||||||||||||||||  |||| ||||||||    
T  33424972 atataaaatgttttt-ataaaataaattaaatctgatt-aaagtattatatgatcatttatcattctattatttcaatt 33424896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 538 - 753
Target Start/End: Original strand, 13760796 - 13761011
Alignment:
Q  538 ccttctgatgagtttcgacgccattttatttagttcatcaaaatgacgggtttgtcaagaatttctcatttatatataacgataatttggtttgcaattg 637  Q
    ||||||| |||| ||||||  ||||||||| |||| |  || ||| ||||  || ||||| ||||||||||||   ||| ||||||||||||||| | ||    
T  13760796 ccttctggtgagcttcgacatcattttattcagtttactaagatggcgggcatgccaagattttctcatttattcctaaggataatttggtttgctactg 13760895  T
Q  638 tttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaa-tcttttttatg 736  Q
    ||||| |||| || ||||||| ||| |||||||| ||| ||||| | || || | || ||||||||||||| ||||||||||| | || || || |||||    
T  13760896 tttgggtgatatgaaaggaaaggaataaccgtgtctttcaaaatacagtttcta-tctttttattctcattgaaaaagttaagctaaattcattcttatg 13760994  T
Q  737 gttgaaatctaaacagg 753  Q
    ||||||||| |||||||    
T  13760995 gttgaaatcaaaacagg 13761011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 535 - 753
Target Start/End: Complemental strand, 35769127 - 35768908
Alignment:
Q  535 gtgccttctgatgagtttcgacgccattttatttagttcatcaaaatgacgggtttgtcaagaatttctcatttatatataacgataatttggtttgcaa 634  Q
    |||||||||  |||| ||||||  ||||||||| |||| | ||||||| | |   || ||||| |||||||||||||  | | |||||||||||||||||    
T  35769127 gtgccttctagtgagcttcgacaacattttattcagtttaccaaaatggctgacatgccaagagtttctcatttatacttcaggataatttggtttgcaa 35769028  T
Q  635 ttgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaa-tctttttt 733  Q
     | ||||| |||||||||| |||| |||||||||| ||||  ||||| ||||  || |||||||| |||| ||| | ||| ||||  |||| || ||  |    
T  35769027 ctatttggatgatttggaaagaaaggaacaaccgtatattccaaaatacggtaaccgctccttttgttctgattgataaaattaaacttaattcgttcct 35768928  T
Q  734 atggttgaaatctaaacagg 753  Q
     |||||||||||||||||||    
T  35768927 ttggttgaaatctaaacagg 35768908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 751
Target Start/End: Complemental strand, 13808069 - 13807939
Alignment:
Q  622 atttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagt 721  Q
    ||||||||||||| ||||||| ||||||||||||||  ||||||| | |||||  ||||| |  | ||| |||||| |  ||||||| || |||| ||||    
T  13808069 atttggtttgcaactgtttggatgatttggaaggaattgaacaactgggtattccaaaatacactttccgctccttcttctctcattgaacaagtaaagt 13807970  T
Q  722 ttaa-tcttttttatggttgaaatctaaaca 751  Q
    | || || ||||||||||||||||| |||||    
T  13807969 taaattcctttttatggttgaaatcaaaaca 13807939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 667
Target Start/End: Original strand, 9598590 - 9598637
Alignment:
Q  620 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaacc 667  Q
    ||||||||||||||  ||||||| ||||||||||||||| ||||||||    
T  9598590 taatttggtttgcatctgtttgggtgatttggaaggaaaggaacaacc 9598637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 620 - 667
Target Start/End: Original strand, 9826161 - 9826208
Alignment:
Q  620 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaacc 667  Q
    ||||||||||||||  ||||||| ||||||||||||||| ||||||||    
T  9826161 taatttggtttgcatctgtttgggtgatttggaaggaaaggaacaacc 9826208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 30592303 - 30592349
Alignment:
Q  52 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaat 98  Q
    |||||||||||||||||  ||||| ||||||||| ||||||||||||    
T  30592303 cttttcttttttaaattacagacactataaaatgatttttaaaaaat 30592349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 21044966 - 21044906
Alignment:
Q  88 ttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattcttt 149  Q
    |||| |||||| |||||||| ||||| ||||| |||||||||||| ||| ||||||||||||    
T  21044966 tttttaaaaataaattaagtgtgatt-aaaatgttatatgatcatctatgatattattcttt 21044906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 546 - 757
Target Start/End: Original strand, 4000 - 4212
Alignment:
Q  546 tgagtttcgacgccattttatttagttcatcaaaatgacgggtttgtcaagaatttctcatttatatataacgataatttggtttgcaattgtttggttg 645  Q
    |||| ||||||  |||||||||||||| | |||| || ||| | || |||||  ||||| ||| ||  ||| | ||||||||||||||| | ||||  ||    
T  4000 tgagcttcgacatcattttatttagtttaccaaactggcggatctgccaagagcttctcttttttacttaatgttaatttggtttgcaactatttgagtg 4099  T
Q  646 atttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagttt-aatcttttttatggttgaaat 744  Q
    |||||||| |||| |||||||| |   ||| ||||| |||| ||| |||||||| |||||||| | ||| |||||||| | || || |||||||||||||    
T  4100 atttggaaagaaaggaacaaccatccttttcaaaatacggtatccgctccttttgttctcattgataaaattaagtttcattcattcttatggttgaaat 4199  T
Q  745 ctaaacaggcggc 757  Q
    ||||||| |||||    
T  4200 ctaaacaagcggc 4212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 622 - 750
Target Start/End: Complemental strand, 38246104 - 38245975
Alignment:
Q  622 atttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagt 721  Q
    |||||||||||||||  |||| ||||||||||||| |||||||||    ||||| ||||  ||||  |||||||||||| ||||||| ||||||| ||||    
T  38246104 atttggtttgcaattaattgggtgatttggaaggagaagaacaactagatatttcaaaacacggtacccactccttttactctcattgaaaaagtaaagt 38246005  T
Q  722 ttaa-tcttttttatggttgaaatctaaac 750  Q
    | || || || |||||||||||||| ||||    
T  38246004 tcaattcattattatggttgaaatcaaaac 38245975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 38198248 - 38198130
Alignment:
Q  46 gacttgcttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattatt 145  Q
    ||||| |||||| ||||||||||  ||||| |||||| ||||||||  |||||||||||||| |||||  || |||||||||||||| |||||| || ||    
T  38198248 gacttacttttcatttttaaattacagacactataaagtgtttttt--aaaatgaattaagtgtgatt-gaagtattatatgatcatatatcatgttgtt 38198152  T
Q  146 ctttcaattgttttaaaatatca 168  Q
     |||||||| ||| |||||||||    
T  38198151 atttcaatt-tttaaaaatatca 38198130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 34552676 - 34552727
Alignment:
Q  119 tattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 170  Q
    ||||||||||||||||||||| || ||||||||||||||| || ||||||||    
T  34552676 tattatatgatcatttatcattttgttctttcaattgtttgaagatatcaaa 34552727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 9933311 - 9933401
Alignment:
Q  73 acaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaattgttttaaaat 164  Q
    ||||| |||||| ||||||  ||||| ||||||||||  || ||| ||||||||||||||||||||| || ||  ||||||| |||||||||    
T  9933311 acaatgtaaaatatttttttcaaaataaattaagtatttttgaaa-tattatatgatcatttatcatgttgttaattcaatttttttaaaat 9933401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 27487105 - 27487156
Alignment:
Q  119 tattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 170  Q
    ||||||||||||||||||||| || ||||||||| | || ||||||||||||    
T  27487105 tattatatgatcatttatcatgttgttctttcaacttttataaaatatcaaa 27487156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 37032430 - 37032514
Alignment:
Q  53 ttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 139  Q
    ||||||||||||||||  |||| |||||| |||||||||  ||||| |||||||| ||||| ||| |||||||||||  ||||||||    
T  37032430 ttttcttttttaaattacagactatataacatgtttttt-taaaataaattaagtgtgatt-aaagtattatatgatagtttatcat 37032514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 753
Target Start/End: Complemental strand, 12868010 - 12867905
Alignment:
Q  649 tggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatcta 747  Q
    |||||| ||| |||||||||||||||  |||||| ||| || | ||||| |||||||||| | || ||||| || || ||||| |||||||||||| | |    
T  12868010 tggaagaaaatgaacaaccgtgtattccaaaatgtggtttctaatccttctattctcattgacaaggttaaattaaattctttcttatggttgaaagcaa 12867911  T
Q  748 aacagg 753  Q
    ||||||    
T  12867910 aacagg 12867905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 622 - 754
Target Start/End: Complemental strand, 3159731 - 3159598
Alignment:
Q  622 atttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaag- 720  Q
    ||||||||||| | | ||||| || |||||||||||| ||| ||||| |||||| ||||| | |  |||||| ||||| |||||||| ||||||| |||     
T  3159731 atttggtttgccactatttgggtgctttggaaggaaaggaataaccgggtatttcaaaatactggttccacttcttttgttctcattgaaaaagtaaagc 3159632  T
Q  721 tttaatcttttttatggttgaaatctaaacaggc 754  Q
    || ||||||| || ||| ||||||||||||||||    
T  3159631 ttcaatctttcttttggctgaaatctaaacaggc 3159598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 15206039 - 15206092
Alignment:
Q  618 gataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgt 671  Q
    ||||||||||||||||  ||||||| ||||||||||||||| ||||||||||||    
T  15206039 gataatttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccgtgt 15206092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 170
Target Start/End: Complemental strand, 54996871 - 54996761
Alignment:
Q  52 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttca 151  Q
    |||||||||||||||||  |||   |||||||||||| ||||||  ||||| |||| ||||| ||  ||||||||||||||||||||| ||   ||||||    
T  54996871 cttttcttttttaaattacagat--tataaaatgtttattaaaa--tgaatgaagtgtgattgaag-tattatatgatcatttatcatgtt---ctttca 54996780  T
Q  152 attgttttaaaatatcaaa 170  Q
    ||| |||||||||||||||    
T  54996779 atttttttaaaatatcaaa 54996761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 15245105 - 15245158
Alignment:
Q  618 gataatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgt 671  Q
    ||||||||||||||||  ||||||| ||| ||||||||||| ||||||||||||    
T  15245105 gataatttggtttgcatctgtttgggtgacttggaaggaaaggaacaaccgtgt 15245158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 651781 - 651881
Alignment:
Q  52 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttca 151  Q
    |||||||||||||||||  |||| |||||| ||| |||||  ||||| |||||||| ||||| ||||||||||| |||| ||| |||| ||||| ||| |    
T  651781 cttttcttttttaaattatagactatataacatg-tttttctaaaataaattaagtgtgatt-aaaatattatacgatcctttgtcatgttattatttta 651878  T
Q  152 att 154  Q
    |||    
T  651879 att 651881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 18086030 - 18086076
Alignment:
Q  52 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaat 98  Q
    |||||||||||||||||  ||||| |||||||||||||||| |||||    
T  18086030 cttttcttttttaaattacagacattataaaatgttttttagaaaat 18086076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0783 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0783
Description:

Target: scaffold0783; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 6069 - 6004
Alignment:
Q  88 ttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaatt 154  Q
    ||||||||||| ||| |||||||||||||  ||||||||||||||||||||| ||||| ||||||||    
T  6069 ttttaaaaaataaatcaagtatgattcaag-tattatatgatcatttatcatgttattatttcaatt 6004  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 620 - 671
Target Start/End: Complemental strand, 22157870 - 22157819
Alignment:
Q  620 taatttggtttgcaattgtttggttgatttggaaggaaaagaacaaccgtgt 671  Q
    ||||||||||||||  ||||||| ||||||||||||||| ||||||||||||    
T  22157870 taatttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccgtgt 22157819  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 651 - 764
Target Start/End: Original strand, 14207304 - 14207418
Alignment:
Q  651 gaaggaaaagaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaat-cttttttatggttgaaatctaaa 749  Q
    |||||||| ||||||||  || ||| ||||| |||  || ||| ||||| |||||||| ||||||| |||||| || | || || |||||||||||||||    
T  14207304 gaaggaaaggaacaaccaggtttttcaaaatacgggttctacttcttttgttctcattgaaaaagtaaagtttcattccttcttttggttgaaatctaaa 14207403  T
Q  750 caggcggcctttgct 764  Q
    |||||||| ||||||    
T  14207404 caggcggcttttgct 14207418  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 40095128 - 40095042
Alignment:
Q  52 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 139  Q
    |||||| ||||||||||  |||| |||||| |||||||||  ||||| |||||||| ||||| ||  |||||||||||| ||||||||    
T  40095128 cttttcgtttttaaattacagactatataacatgttttttctaaaataaattaagtgtgattgaag-tattatatgatcgtttatcat 40095042  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 50079557 - 50079490
Alignment:
Q  73 acaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatatt 142  Q
    ||||||||||||||||||| |||| | |||||||| |  || ||| ||||||||||||||||||||||||    
T  50079557 acaatataaaatgtttttttaaaa-taaattaagtgttttt-aaagtattatatgatcatttatcatatt 50079490  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 81570 - 81505
Alignment:
Q  88 ttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcatattattctttcaatt 154  Q
    ||||||||||| ||| |||||||||| ||  ||||||||||||||||||||| ||||| ||||||||    
T  81570 ttttaaaaaataaatcaagtatgattgaag-tattatatgatcatttatcatgttattatttcaatt 81505  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 764
Target Start/End: Complemental strand, 19229512 - 19229407
Alignment:
Q  660 gaacaaccgtgtattttaaaatgcggtgtccactccttttattctcattaaaaaagttaagtttaa-tcttttttatggttgaaatctaaacaggcggcc 758  Q
    |||||||||  ||||| ||||| |||| ||||||||||| | |||| |||||||||| ||||| || || || |||||||||||||| ||||| | |||     
T  19229512 gaacaaccggatatttcaaaatacggtatccactcctttcactctcgttaaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtggct 19229413  T
Q  759 tttgct 764  Q
    ||||||    
T  19229412 tttgct 19229407  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 658
Target Start/End: Original strand, 24395694 - 24395738
Alignment:
Q  614 taacgataatttggtttgcaattgtttggttgatttggaaggaaa 658  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||    
T  24395694 taactataatttggtttgcaactgtttgggtgatttggaaggaaa 24395738  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 4097707 - 4097621
Alignment:
Q  52 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcatttatcat 139  Q
    |||||||||||||||||   |||||||||| || ||||||  ||||| |||||||| |||||  || |||||||||||| ||||||||    
T  4097707 cttttcttttttaaattacggacaatataacattttttttccaaaataaattaagtgtgatt-gaagtattatatgatcgtttatcat 4097621  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 170
Target Start/End: Original strand, 1813994 - 1814048
Alignment:
Q  116 aaatattatatgatcatttatcatattattctttcaattgttttaaaatatcaaa 170  Q
    ||||||||||| |||||||||||||  |||||||||| | ||||||||| |||||    
T  1813994 aaatattatatcatcatttatcataccattctttcaacttttttaaaatttcaaa 1814048  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 619 - 665
Target Start/End: Complemental strand, 21605364 - 21605318
Alignment:
Q  619 ataatttggtttgcaattgtttggttgatttggaaggaaaagaacaa 665  Q
    |||||||||||||||  ||||||| ||||||||||||||| ||||||    
T  21605364 ataatttggtttgcatctgtttgggtgatttggaaggaaaggaacaa 21605318  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 16509331 - 16509408
Alignment:
Q  52 cttttcttttttaaattgaagacaatataaaatgttttttaaaaaatgaattaagtatgattcaaaatattatatgatcat 132  Q
    |||||||||||| |||| |||||| ||||||||||||||  |||||| ||| |||| |||||  || ||||||||||||||    
T  16509331 cttttcttttttgaattaaagacactataaaatgttttt--aaaaataaatcaagtgtgatt-gaagtattatatgatcat 16509408  T

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Target: scaffold0074 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 614 - 658
Target Start/End: Original strand, 25778 - 25822
Alignment:
Q  614 taacgataatttggtttgcaattgtttggttgatttggaaggaaa 658  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||    
T  25778 taactataatttggtttgcaactgtttggatgatttggaaggaaa 25822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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