View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15567_low_31 (Length: 266)

Name: NF15567_low_31
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15567_low_31
NF15567_low_31
[»] chr2 (19 HSPs)
chr2 (1-99)||(18899971-18900069)
chr2 (3-68)||(15224221-15224286)
chr2 (9-60)||(12877685-12877736)
chr2 (9-59)||(3991773-3991823)
chr2 (5-58)||(13898477-13898530)
chr2 (5-58)||(14039094-14039147)
chr2 (3-55)||(11153395-11153447)
chr2 (1-68)||(13833114-13833181)
chr2 (1-68)||(25288603-25288670)
chr2 (9-60)||(38413505-38413556)
chr2 (5-63)||(10657875-10657933)
chr2 (10-60)||(19948537-19948587)
chr2 (3-61)||(33136063-33136121)
chr2 (3-67)||(40829628-40829692)
chr2 (9-59)||(33262853-33262903)
chr2 (3-68)||(28739991-28740056)
chr2 (5-54)||(37810930-37810979)
chr2 (22-59)||(43318813-43318850)
chr2 (3-59)||(15926378-15926434)
[»] chr7 (24 HSPs)
chr7 (1-98)||(14741387-14741484)
chr7 (3-100)||(4639918-4640015)
chr7 (5-59)||(37915942-37915996)
chr7 (9-98)||(12740778-12740867)
chr7 (3-67)||(43172146-43172210)
chr7 (3-58)||(11735234-11735289)
chr7 (11-57)||(14732347-14732393)
chr7 (10-67)||(16709427-16709484)
chr7 (10-67)||(17683663-17683720)
chr7 (3-68)||(37328345-37328410)
chr7 (3-68)||(44256457-44256522)
chr7 (10-63)||(48136937-48136990)
chr7 (10-98)||(26201841-26201929)
chr7 (9-60)||(21024065-21024116)
chr7 (4-63)||(29585957-29586016)
chr7 (10-68)||(32884209-32884267)
chr7 (3-68)||(8675769-8675834)
chr7 (3-68)||(18838848-18838913)
chr7 (3-68)||(33383112-33383177)
chr7 (10-63)||(37972586-37972639)
chr7 (3-68)||(40460416-40460481)
chr7 (4-100)||(27148804-27148900)
chr7 (10-58)||(41827776-41827824)
chr7 (11-67)||(42610609-42610665)
[»] chr6 (14 HSPs)
chr6 (3-104)||(6788055-6788156)
chr6 (3-98)||(1463715-1463810)
chr6 (9-100)||(10113830-10113921)
chr6 (5-59)||(31996294-31996348)
chr6 (3-68)||(31975696-31975761)
chr6 (5-97)||(3000202-3000294)
chr6 (9-60)||(8779631-8779682)
chr6 (3-102)||(16438663-16438762)
chr6 (3-60)||(28900882-28900939)
chr6 (3-67)||(2606887-2606951)
chr6 (9-60)||(7835414-7835465)
chr6 (52-98)||(1452072-1452118)
chr6 (3-57)||(7497548-7497602)
chr6 (5-57)||(21199556-21199608)
[»] chr5 (17 HSPs)
chr5 (3-98)||(7125210-7125305)
chr5 (3-98)||(28623212-28623307)
chr5 (3-80)||(37798165-37798242)
chr5 (3-68)||(5651232-5651297)
chr5 (5-60)||(2675121-2675176)
chr5 (5-55)||(33892889-33892939)
chr5 (10-63)||(4240170-4240223)
chr5 (3-68)||(4549955-4550020)
chr5 (3-100)||(16548890-16548987)
chr5 (9-60)||(25868798-25868849)
chr5 (9-59)||(34909592-34909642)
chr5 (3-63)||(1460843-1460903)
chr5 (9-60)||(21238810-21238861)
chr5 (3-66)||(29716836-29716899)
chr5 (9-55)||(24258534-24258580)
chr5 (3-68)||(13926371-13926436)
chr5 (3-68)||(37014294-37014359)
[»] chr3 (31 HSPs)
chr3 (3-98)||(8598620-8598715)
chr3 (3-98)||(49296077-49296172)
chr3 (99-221)||(28853849-28853966)
chr3 (3-98)||(53835923-53836018)
chr3 (5-60)||(9818611-9818666)
chr3 (5-98)||(7665552-7665645)
chr3 (3-59)||(22489529-22489585)
chr3 (3-63)||(54629294-54629354)
chr3 (1-60)||(25049870-25049929)
chr3 (3-66)||(43172920-43172983)
chr3 (3-68)||(48379588-48379653)
chr3 (5-47)||(2118484-2118526)
chr3 (4-66)||(4962777-4962839)
chr3 (3-68)||(21386529-21386594)
chr3 (3-68)||(26107767-26107832)
chr3 (3-68)||(50761797-50761862)
chr3 (13-59)||(30238550-30238597)
chr3 (9-68)||(52810796-52810855)
chr3 (1-59)||(51737382-51737440)
chr3 (3-68)||(17946666-17946731)
chr3 (10-59)||(19386942-19386991)
chr3 (10-59)||(20833344-20833393)
chr3 (3-68)||(31645958-31646023)
chr3 (3-68)||(33693247-33693312)
chr3 (3-68)||(37455285-37455350)
chr3 (3-80)||(45602462-45602539)
chr3 (3-63)||(18750086-18750146)
chr3 (1-97)||(21718456-21718552)
chr3 (3-59)||(49458358-49458414)
chr3 (3-59)||(50903006-50903062)
chr3 (3-55)||(52617669-52617721)
[»] chr1 (30 HSPs)
chr1 (3-98)||(4005049-4005144)
chr1 (3-98)||(9192006-9192101)
chr1 (3-98)||(1243350-1243445)
chr1 (3-98)||(8147299-8147394)
chr1 (3-98)||(41353403-41353498)
chr1 (3-98)||(51106874-51106969)
chr1 (3-98)||(26757597-26757692)
chr1 (3-59)||(11579144-11579200)
chr1 (3-68)||(48966535-48966600)
chr1 (3-67)||(47371619-47371683)
chr1 (3-67)||(49971640-49971704)
chr1 (9-60)||(7798520-7798571)
chr1 (3-68)||(49453104-49453170)
chr1 (9-58)||(1108374-1108423)
chr1 (3-68)||(5494792-5494857)
chr1 (3-68)||(46328425-46328490)
chr1 (3-80)||(52182326-52182403)
chr1 (3-55)||(5209412-5209464)
chr1 (9-60)||(18954485-18954536)
chr1 (3-68)||(8140927-8140992)
chr1 (1-58)||(32760141-32760198)
chr1 (9-61)||(34751622-34751674)
chr1 (1-68)||(3583598-3583665)
chr1 (5-68)||(15834730-15834793)
chr1 (9-52)||(33886910-33886953)
chr1 (9-52)||(33957297-33957340)
chr1 (5-60)||(34019139-34019194)
chr1 (3-61)||(49231453-49231511)
chr1 (13-98)||(25830953-25831038)
chr1 (3-68)||(45273006-45273071)
[»] chr4 (31 HSPs)
chr4 (1-98)||(8084170-8084267)
chr4 (3-100)||(29469122-29469219)
chr4 (3-60)||(33138799-33138856)
chr4 (3-67)||(23671421-23671485)
chr4 (5-60)||(6487367-6487422)
chr4 (3-58)||(42937458-42937513)
chr4 (3-80)||(871789-871865)
chr4 (9-60)||(56424028-56424079)
chr4 (9-59)||(51967277-51967327)
chr4 (3-68)||(29855956-29856021)
chr4 (9-58)||(40487712-40487761)
chr4 (3-68)||(49501229-49501294)
chr4 (3-68)||(49507294-49507359)
chr4 (3-60)||(50517192-50517249)
chr4 (3-63)||(41725558-41725618)
chr4 (9-59)||(3860237-3860287)
chr4 (9-59)||(3868994-3869044)
chr4 (3-68)||(29510113-29510178)
chr4 (3-68)||(32322506-32322571)
chr4 (3-64)||(32889891-32889952)
chr4 (9-54)||(41470379-41470424)
chr4 (3-63)||(49834530-49834590)
chr4 (13-68)||(23987637-23987692)
chr4 (13-60)||(24966576-24966623)
chr4 (1-60)||(46286708-46286767)
chr4 (9-59)||(8563411-8563461)
chr4 (9-59)||(9972773-9972823)
chr4 (5-59)||(25013446-25013500)
chr4 (5-75)||(55165509-55165579)
chr4 (3-63)||(28484340-28484401)
chr4 (3-60)||(46862962-46863019)
[»] chr8 (16 HSPs)
chr8 (3-98)||(19484176-19484271)
chr8 (3-101)||(8029885-8029983)
chr8 (1-68)||(32497981-32498048)
chr8 (3-98)||(26856515-26856610)
chr8 (5-55)||(1527951-1528001)
chr8 (5-59)||(41252164-41252218)
chr8 (10-75)||(6388177-6388242)
chr8 (3-68)||(9288190-9288255)
chr8 (3-68)||(10295035-10295100)
chr8 (3-98)||(18305672-18305767)
chr8 (13-68)||(43166382-43166437)
chr8 (3-68)||(19717570-19717635)
chr8 (3-60)||(24067105-24067162)
chr8 (3-68)||(31625748-31625813)
chr8 (3-67)||(17234706-17234770)
chr8 (3-59)||(37131331-37131387)
[»] scaffold1128 (1 HSPs)
scaffold1128 (3-67)||(949-1013)
[»] scaffold0263 (1 HSPs)
scaffold0263 (45-100)||(486-541)
[»] scaffold0042 (1 HSPs)
scaffold0042 (1-68)||(57759-57826)
[»] scaffold0573 (1 HSPs)
scaffold0573 (3-60)||(8855-8912)
[»] scaffold0246 (2 HSPs)
scaffold0246 (9-58)||(25651-25700)
scaffold0246 (9-61)||(1365-1417)
[»] scaffold1504 (1 HSPs)
scaffold1504 (3-98)||(1276-1371)
[»] scaffold0433 (1 HSPs)
scaffold0433 (9-59)||(390-440)
[»] scaffold0543 (1 HSPs)
scaffold0543 (5-68)||(10964-11027)
[»] scaffold0110 (1 HSPs)
scaffold0110 (3-68)||(39332-39397)
[»] scaffold0013 (1 HSPs)
scaffold0013 (3-80)||(89259-89336)


Alignment Details
Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 18899971 - 18900069
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  18899971 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattgc 18900069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 15224286 - 15224221
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||||||||| ||||||||||| |||| | ||||||||||||||| | ||||||||||    
T  15224286 agaaatcgagtttacctctgagttaacacgattttggtacctaaacacgtaaaattggtaaactcg 15224221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 12877736 - 12877685
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  12877736 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgg 12877685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 3991823 - 3991773
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  3991823 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 3991773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 13898530 - 13898477
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactc 58  Q
    |||||||||||||||||||||||||||||||||  | |||||| ||||||||||    
T  13898530 aaatcgagtttacctccgagttaacacgtttttgccgcctaaaaacgtaaactc 13898477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 14039147 - 14039094
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactc 58  Q
    |||||||||||||||||||||||||||||||||  | |||||| ||||||||||    
T  14039147 aaatcgagtttacctccgagttaacacgtttttgccgcctaaaaacgtaaactc 14039094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 11153395 - 11153447
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaa 55  Q
    ||||| |||||||||||||||||||||||| ||| |||||||||| |||||||    
T  11153395 agaaaccgagtttacctccgagttaacacgatttcagcacctaaaaacgtaaa 11153447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 13833114 - 13833181
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||| ||||||||||| ||||||||||| |||| | ||||||| ||||||||||| ||| ||||    
T  13833114 ctagaaattgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgataatctcg 13833181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 25288670 - 25288603
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||| |||||||||||| ||||||||||| |||| | ||||||| | ||||||||||||| ||||    
T  25288670 ctagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcg 25288603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 38413505 - 38413556
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||| ||||||||||  |||||||| ||||||||||||    
T  38413505 cgagtttacctccgagtttacacgtttttgccacctaaaaacgtaaactcgg 38413556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 10657933 - 10657875
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    ||||||| |||||||| ||||||||||| |||| | ||||||| |||||||||||||||    
T  10657933 aaatcgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaa 10657875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 19948587 - 19948537
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    ||||||||||||||||||||||||||||  |||||||| | ||||||||||    
T  19948587 gagtttacctccgagttaacacgtttttgccacctaaaaatgtaaactcgg 19948537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 33136121 - 33136063
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 61  Q
    |||||||||||||||||| ||||||||||| |||| | ||||||| || ||||||||||    
T  33136121 agaaatcgagtttacctcagagttaacacgatttttgtacctaaaaacataaactcggt 33136063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 40829692 - 40829628
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    ||||| |||||||||||||||||||||||| ||||   ||||||| | ||| |||||||||||||    
T  40829692 agaaaccgagtttacctccgagttaacacgattttgatacctaaaaatgtagactcggtaaactc 40829628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 33262903 - 33262853
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||||||||| |||||| ||||||||||  |||||||| |||||||||||    
T  33262903 cgagtttaccttcgagtttacacgtttttgccacctaaaaacgtaaactcg 33262853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 28739991 - 28740056
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| || |||||||||||| ||||    
T  28739991 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaacataaactcggtaatctcg 28740056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 37810930 - 37810979
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaa 54  Q
    ||||| ||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  37810930 aaatcaagtttacctccgatttaacacgtttttggcatctaaaaacgtaa 37810979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 43318813 - 43318850
Alignment:
Q  22 gagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  43318813 gagttaacacgtttttagcacataaaaacgtaaactcg 43318850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 15926434 - 15926378
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||| ||||||||||| ||||| |||| | ||| ||| |||||||||||    
T  15926434 agaaatcgagttaacctccgagttgacacgattttggtaccaaaaaacgtaaactcg 15926378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 14741484 - 14741387
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  14741484 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 14741387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 4639918 - 4640015
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgct 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  4639918 agaaatagagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattgct 4640015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 37915942 - 37915996
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  37915942 aaatcgagtttacctctgagttaaaacgcttttagcacctaaacacgtaaactcg 37915996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 12740867 - 12740778
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    |||||||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||  ||||| ||||  |||||  |||||||||    
T  12740867 cgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgcgtaacattg 12740778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 43172210 - 43172146
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    |||||||||||||||||||||||||||| | ||||   ||||||| | |||||||||||||||||    
T  43172210 agaaatcgagtttacctccgagttaacatgattttgatacctaaaaatgtaaactcggtaaactc 43172146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 11735234 - 11735289
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactc 58  Q
    |||||||||||||||||||||||||||||| |||| | |||||||  |||||||||    
T  11735234 agaaatcgagtttacctccgagttaacacgattttgggacctaaaatcgtaaactc 11735289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 14732347 - 14732393
Alignment:
Q  11 agtttacctccgagttaacacgtttttagcacctaaacacgtaaact 57  Q
    |||||||||||||||||||||||||||  |||||||| |||||||||    
T  14732347 agtttacctccgagttaacacgtttttgccacctaaaaacgtaaact 14732393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 16709484 - 16709427
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    ||||||||||| |||||| |||| |||| | ||||||| |||||||||||||||||||    
T  16709484 gagtttacctcagagttaccacgattttggtacctaaaaacgtaaactcggtaaactc 16709427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 17683720 - 17683663
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    ||||||||||| |||||| |||| |||| | ||||||| |||||||||||||||||||    
T  17683720 gagtttacctcagagttaccacgattttggtacctaaaaacgtaaactcggtaaactc 17683663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 37328410 - 37328345
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||||||||  ||||||||||| |||| | ||||||| ||||||||||| ||| ||||    
T  37328410 agaaatcgagtttaccttagagttaacacgatttttgtacctaaaaacgtaaactcgataatctcg 37328345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 44256457 - 44256522
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||||||||| ||||||||||| |||| | | ||||| ||||||||||| ||| ||||    
T  44256457 agaaatcgagtttacctcagagttaacacgatttttgtatctaaaaacgtaaactcgataatctcg 44256522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 48136937 - 48136990
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    ||||||||||| ||||||||||| |||| | ||||||| |||||||||||||||    
T  48136937 gagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcggtaa 48136990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 26201841 - 26201929
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||| ||||| |||| | ||||||| | ||||| |||||||||||| | |||| ||||  ||||| || |||||||    
T  26201841 gagtttacctccgagtttacacgattttggtacctaaaaatgtaaattcggtaaactcggcaagttaacactcgatttgtggaacattg 26201929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 21024116 - 21024065
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    ||||||||||| |||||||||||||||||  ||||||||  |||||||||||    
T  21024116 cgagtttaccttcgagttaacacgtttttgtcacctaaaatcgtaaactcgg 21024065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 29586016 - 29585957
Alignment:
Q  4 gaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    |||| ||| |||||||| ||||||||||| |||| | ||||||| |||||||||||||||    
T  29586016 gaaaccgactttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaa 29585957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 32884267 - 32884209
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||||||| |||||||| || |||| | ||||||| ||||||||||||||| ||||    
T  32884267 gagtttacctcagagttaactcgatttttgtacctaaaaacgtaaactcggtaatctcg 32884209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 8675834 - 8675769
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||  ||||||||||| |||| | ||||||| |||| |||||||||| ||||    
T  8675834 agaaaccgagtttaccttagagttaacacgattttggtacctaaaaacgttaactcggtaatctcg 8675769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 18838913 - 18838848
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| | ||||||||||||| ||||    
T  18838913 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcg 18838848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 33383177 - 33383112
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||| ||| |||||| |||| |||| | ||||||| ||||||||||||||| ||||    
T  33383177 agaaaccgagtttatctcagagttaccacgattttggtacctaaaaacgtaaactcggtaatctcg 33383112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 37972586 - 37972639
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    ||||||| ||| ||||||||||| |||| | ||||||| |||||||||||||||    
T  37972586 gagtttatctcagagttaacacgattttggtacctaaaaacgtaaactcggtaa 37972639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 40460416 - 40460481
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | |||||||  |||||||||||||| ||||    
T  40460416 agaaaccgattttacctcagagttaacacgatttttgtacctaaaagcgtaaactcggtaatctcg 40460481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 27148900 - 27148804
Alignment:
Q  4 gaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgct 100  Q
    ||||| ||| |||||||||| |||||||| ||||   ||||||| ||||||||||| ||||||   |||||| ||||  ||||| || |||||||||    
T  27148900 gaaattgaggttacctccgatttaacacgattttgatacctaaaaacgtaaactcgataaactttgcgagttaacactcgatttgtggaacattgct 27148804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 41827824 - 41827776
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactc 58  Q
    ||||||||||| ||||||||||| |||| | ||||||| ||||||||||    
T  41827824 gagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactc 41827776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 42610665 - 42610609
Alignment:
Q  11 agtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    ||||||||||  | |||||||| |||| | ||||||||||||||| |||||||||||    
T  42610665 agtttacctcaaatttaacacgattttggtacctaaacacgtaaattcggtaaactc 42610609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 6788156 - 6788055
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgctat 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||    
T  6788156 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattgatat 6788057  T
Q  103 ca 104  Q
    ||    
T  6788056 ca 6788055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 1463715 - 1463810
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  1463715 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 1463810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 10113830 - 10113921
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgct 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  10113830 cgagtttacctccgagttaacacgtttttaggacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattgct 10113921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 31996294 - 31996348
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  31996294 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 31996348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 31975696 - 31975761
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||||||||| ||||||||||| |||| | |||||||||| ||||||| |||||||||    
T  31975696 agaaatcgagtttacctcagagttaacacgattttggtacctaaacacataaactcagtaaactcg 31975761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 3000294 - 3000202
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacatt 97  Q
    ||||||| |||||| ||||||||||||| |||| | ||||||||||||||| || ||||||||| |||||| ||||  ||||| || ||||||    
T  3000294 aaatcgaatttacccccgagttaacacgattttggtacctaaacacgtaaaatcagtaaactcggcgagttaacacttgatttgtggaacatt 3000202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 8779631 - 8779682
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  8779631 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgg 8779682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 16438762 - 16438663
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgctat 102  Q
    |||| |||||||||||||| |||||||||| |||| | ||||||| ||||||||||| ||||||||  ||||| ||||  |||||  | |||||||||||    
T  16438762 agaagtcgagtttacctccaagttaacacgatttttgtacctaaaaacgtaaactcgataaactcggagagttaacactcgatttgcggaacattgctat 16438663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 28900882 - 28900939
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||| ||||||||||| |||| | ||||||||| ||||||||||    
T  28900882 agaaatcgagtttacctcagagttaacacgattttggtacctaaacatgtaaactcgg 28900939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 2606951 - 2606887
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    |||||||||||||||||| ||||||| ||| |||| |  ||||||||||||||||| ||||||||    
T  2606951 agaaatcgagtttacctcagagttaaaacgattttggtgcctaaacacgtaaactcagtaaactc 2606887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 7835414 - 7835465
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    ||||||||||||||| |||||||||||||  |||||||| ||||||||||||    
T  7835414 cgagtttacctccgacttaacacgtttttgccacctaaaaacgtaaactcgg 7835465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 1452072 - 1452118
Alignment:
Q  52 taaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    |||||||||||||||||||||||||||||| ||||| || |||||||    
T  1452072 taaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 1452118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 7497602 - 7497548
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaact 57  Q
    ||||| |||||||||||| ||||||||||| |||| | ||||||| |||||||||    
T  7497602 agaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaact 7497548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 21199608 - 21199556
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaact 57  Q
    |||||||||||||||  ||||||||||| ||||  |||||||| |||||||||    
T  21199608 aaatcgagtttaccttggagttaacacggttttgccacctaaaaacgtaaact 21199556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 7125210 - 7125305
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  7125210 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 7125305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 28623212 - 28623307
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| || |||||||    
T  28623212 agaaatcgagtttatctccgagttaacacgtttttagcacctaaacacgtaaactcgataaactcgctgagttgacacgcgatttgtggaacattg 28623307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 37798165 - 37798242
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacac 80  Q
    |||||| ||||||||||  ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  37798165 agaaattgagtttacctttgagttaacacgtttttaacagataaacacgtaaactcggtaaactcgccgagttgacac 37798242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 5651232 - 5651297
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||||||| ||| ||||||||    
T  5651232 agaaatcgagtttacctccgagttaacacgattttggtacctaaacacgtaaaatcgataaactcg 5651297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 2675121 - 2675176
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  2675121 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgg 2675176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 33892889 - 33892939
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaa 55  Q
    |||||||||||||||||||||||||||||||||  |||||||| |||||||    
T  33892889 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaa 33892939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 4240170 - 4240223
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    ||||||||||| ||||||||||| |||| ||||||||| |||||||||||||||    
T  4240170 gagtttacctcagagttaacacgatttttgcacctaaaaacgtaaactcggtaa 4240223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 4549955 - 4550020
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||||||||||||||||||| ||||    
T  4549955 agaaaccgattttacctcagagttaacacgatttttgtacctaaacacgtaaactcggtaatctcg 4550020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 16548890 - 16548987
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgct 100  Q
    |||||| ||||||||||||||||| ||||| |||| | ||||||| ||||||||||| |||||||   ||||| ||||  ||||| || |||||||||    
T  16548890 agaaattgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcgataaactcaatgagttaacactcgatttatggaacattgct 16548987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 25868849 - 25868798
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||  |||||||| || |||||||||    
T  25868849 cgagtttacctccgagttaacacgtttttgccacctaaaaacataaactcgg 25868798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 34909642 - 34909592
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||||||||||||| |||||||||||||  |||||||| |||||||||||    
T  34909642 cgagtttacctccgaattaacacgtttttgccacctaaaaacgtaaactcg 34909592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 1460843 - 1460903
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    ||||| |||||||||||| ||||||||||  |||| | ||||||| |||||||||||||||    
T  1460843 agaaaccgagtttacctctgagttaacacaatttttgtacctaaaaacgtaaactcggtaa 1460903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 21238810 - 21238861
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||  || ||||| ||||||| ||||    
T  21238810 cgagtttacctccgagttaacacgtttttgccatctaaaaacgtaaaatcgg 21238861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 29716836 - 29716899
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaact 66  Q
    ||||||| ||||||||| |||||||||||| ||||   ||||||| |||||||||| |||||||    
T  29716836 agaaatcaagtttaccttcgagttaacacgattttgatacctaaaaacgtaaactccgtaaact 29716899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 24258534 - 24258580
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaa 55  Q
    |||||||||||||||||| ||||||||||  |||||||| |||||||    
T  24258534 cgagtttacctccgagtttacacgtttttgccacctaaaaacgtaaa 24258580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 13926436 - 13926371
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| ||||||||||| ||| ||||    
T  13926436 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgataatctcg 13926371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 37014359 - 37014294
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| | ||||||||||||| ||||    
T  37014359 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcg 37014294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 8598715 - 8598620
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  8598715 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 8598620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 49296172 - 49296077
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  49296172 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 49296077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 28853966 - 28853849
Alignment:
Q  99 ctatcaaaactagaagatttccctaacggtctaaaattgcttgatggatgaagaagattcaaaatcaactccccgcccctaggggaaaagaaaatatata 198  Q
    ||||||| ||||||||||||||||||||||||||||||||| |   |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||    
T  28853966 ctatcaatactagaagatttccctaacggtctaaaattgctag---gatgaagaagattcaagatcaactccccgcccctagggaaaaagaaaat--ata 28853872  T
Q  199 ttatccagtataactacagaaat 221  Q
    |||||||||||||||||||||||    
T  28853871 ttatccagtataactacagaaat 28853849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 53836018 - 53835923
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||    
T  53836018 agaaatcaagtttacctccaagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgaattgacacgcgatttgtggaacattg 53835923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 9818611 - 9818666
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  9818611 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgg 9818666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 7665645 - 7665552
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    |||||||||||||||||||||||||||| |||| | | ||||| ||||||||| |||||| ||| |||||| ||||  ||||| || |||||||    
T  7665645 aaatcgagtttacctccgagttaacacgattttggtagctaaaaacgtaaactaggtaaattcggcgagttaacactcgatttgtggaacattg 7665552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 22489529 - 22489585
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||||||||||||| || || ||||||||||||| |||||||||||||||||||||    
T  22489529 agaaatcgagtttacatctgatttaacacgtttttggcacctaaacacgtaaactcg 22489585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 54629354 - 54629294
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    |||||||||||||||||| ||||||||||| |||| | ||||||| |||||||||||||||    
T  54629354 agaaatcgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaa 54629294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25049929 - 25049870
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||| ||||| |||| | ||||||| ||||||||||||    
T  25049929 ctagaaatcgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcgg 25049870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 43172983 - 43172920
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaact 66  Q
    ||||||||||||||||||||||| |||||| |||| | |||||||||| |||||||| ||||||    
T  43172983 agaaatcgagtttacctccgagtcaacacgattttggtacctaaacacataaactcgataaact 43172920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 48379653 - 48379588
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||||||||| || |||||||| |||| | ||||||| ||||||||||||||| ||||    
T  48379653 agaaatcgagtttacctcagaattaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 48379588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 2118484 - 2118526
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaa 47  Q
    ||||||||||||||| ||||||||||||||||| |||||||||    
T  2118484 aaatcgagtttaccttcgagttaacacgttttttgcacctaaa 2118526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 4962777 - 4962839
Alignment:
Q  4 gaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaact 66  Q
    |||||||||||||||||| |||||||||| ||||   ||||||| ||||||||||| ||||||    
T  4962777 gaaatcgagtttacctccaagttaacacgattttgatacctaaaaacgtaaactcgataaact 4962839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 21386529 - 21386594
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||||||||||||||  |||||||||| ||||   ||||||| | ||||||||||||||||||    
T  21386529 agaaatcgagtttacctctaagttaacacgattttgatacctaaaaatgtaaactcggtaaactcg 21386594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 26107832 - 26107767
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||||||||| ||||||||| | |||| | ||||||| ||||||||||| ||| ||||    
T  26107832 agaaatcgagtttacctcagagttaacatgatttttgtacctaaaaacgtaaactcgttaatctcg 26107767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 50761797 - 50761862
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||| | |||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  50761797 agaaatctattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 50761862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 30238550 - 30238597
Alignment:
Q  13 tttacctccgagttaacacg-tttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||||||||||| ||||| ||||||||| |||||||||||    
T  30238550 tttacctccgagttaacacgttttttcgcacctaaaaacgtaaactcg 30238597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 52810855 - 52810796
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||| ||||||||||  |||| | ||||||| ||||||||||||||| ||||    
T  52810855 cgagtttacctcagagttaacacaatttttgtacctaaaaacgtaaactcggtaatctcg 52810796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51737382 - 51737440
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||||| |||||||||||| ||||||||||| |||| | ||||||| | |||||||||    
T  51737382 ctagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaatgtaaactcg 51737440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 17946731 - 17946666
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||| ||||||||| | |||| | ||||||| ||||||||||| ||| ||||    
T  17946731 agaaaccgagtttacctcagagttaacatgatttttgtacctaaaaacgtaaactcgataatctcg 17946666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 19386942 - 19386991
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||| ||||||||||||| |||||  |||||||| |||||||||||    
T  19386942 gagtttacatccgagttaacacatttttgacacctaaatacgtaaactcg 19386991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 20833393 - 20833344
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||||||||| ||||||||||| |||| | ||||||| |||||||||||    
T  20833393 gagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcg 20833344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 31645958 - 31646023
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| |||||| |||||||| ||||    
T  31645958 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaagctcggtaatctcg 31646023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 33693312 - 33693247
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||||||||||||||| |||||||||| |||| | |  ||||  | |||||||||||||||||    
T  33693312 agaaatcgagtttacctccaagttaacacgattttggtatgtaaaatcataaactcggtaaactcg 33693247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 37455350 - 37455285
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| |||||| |||||||| ||||    
T  37455350 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaagctcggtaatctcg 37455285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 45602462 - 45602539
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacac 80  Q
    |||||| |||||||||| |||||| ||||  |||||  ||| ||| ||||||| |||||||||||| |||||| ||||    
T  45602462 agaaattgagtttacctacgagttgacacaattttaatacccaaaaacgtaaattcggtaaactcggcgagttaacac 45602539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 18750146 - 18750086
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    ||||| |||||||||||| ||||||||| | |||| | ||||||| |||||||||| ||||    
T  18750146 agaaaccgagtttacctcagagttaacatgatttttgtacctaaaaacgtaaactcagtaa 18750086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 21718456 - 21718552
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacatt 97  Q
    |||||||||||||||| ||  ||||| ||||| |||| | | || || |||||||||| ||||| ||| |||||| ||||  |||||||| ||||||    
T  21718456 ctagaaatcgagtttatctttgagttgacacgattttggtatcttaaaacgtaaactcagtaaaatcgacgagttaacactcgatttttggaacatt 21718552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 49458414 - 49458358
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||||||||||||| || ||||||||||  ||||   |||||||||||||||||||    
T  49458414 agaaatcgagtttacttcagagttaacacaattttgatacctaaacacgtaaactcg 49458358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 50903006 - 50903062
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||| |||||||||||| ||||||||||| |||| | || |||| |||||||||||    
T  50903006 agaaaccgagtttacctcagagttaacacgatttttgtacataaaaacgtaaactcg 50903062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 52617669 - 52617721
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaa 55  Q
    ||||| |||||||||||| ||||||||||| |||| | ||||||| |||||||    
T  52617669 agaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaa 52617721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 4005144 - 4005049
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  4005144 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 4005049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 9192101 - 9192006
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  9192101 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 9192006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 1243350 - 1243445
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||    
T  1243350 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactaggtaaactcgccgagttgacacgcgatttgtggaacattg 1243445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 8147394 - 8147299
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||    
T  8147394 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgctgagttgacacgcgatttgtggaacattg 8147299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 41353498 - 41353403
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||||||    
T  41353498 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacataaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 41353403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 51106969 - 51106874
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  51106969 agaaatcgagttttcctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 51106874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 26757692 - 26757597
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||    
T  26757692 agaaatcgagtttacctctgagttaactcgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 26757597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 11579144 - 11579200
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  11579144 agaaatcaaatttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 11579200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 48966535 - 48966600
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||| |||||||||| ||||||||||| |||| | |||||||||||||||||| |||||||||    
T  48966535 agaaatcaagtttacctcagagttaacacgattttggtacctaaacacgtaaactcagtaaactcg 48966600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 47371619 - 47371683
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    |||||||||||||||||||||||||||||| |||| | ||||||  ||||||||||| |||||||    
T  47371619 agaaatcgagtttacctccgagttaacacgattttggtacctaagtacgtaaactcgataaactc 47371683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 49971640 - 49971704
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    ||||| |||||||||||||||||| ||||| |||| | ||||||| |||||||||||||||||||    
T  49971640 agaaaacgagtttacctccgagttgacacgattttggtacctaaaaacgtaaactcggtaaactc 49971704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 7798571 - 7798520
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  7798571 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgg 7798520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 49453104 - 49453170
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacg-tttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||||||||| ||||||||||| ||||| | |||||||||| |||||| ||||||||||    
T  49453104 agaaatcgagtttacctcagagttaacacgatttttggtacctaaacacataaactaggtaaactcg 49453170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 1108423 - 1108374
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactc 58  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  1108423 cgagtttacctccgagtttacacgtttttaccacctaaaaacgtaaactc 1108374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 5494792 - 5494857
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  5494792 agaaaccgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactcggtaatctcg 5494857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 46328490 - 46328425
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  46328490 agaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 46328425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 52182403 - 52182326
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacac 80  Q
    ||||||||| ||||||||||| || ||||| ||| || ||||||| ||||||||||| |||||||| |||||| ||||    
T  52182403 agaaatcgaatttacctccgaattgacacgatttcagtacctaaaaacgtaaactcgataaactcggcgagttaacac 52182326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 5209412 - 5209464
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaa 55  Q
    |||||||||||| ||||||||||||||||| |||| | |||||||||||||||    
T  5209412 agaaatcgagttgacctccgagttaacacgattttggtacctaaacacgtaaa 5209464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 18954536 - 18954485
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    ||||||||| |||||||||||||||||||  |||||||| ||||||||||||    
T  18954536 cgagtttacgtccgagttaacacgtttttgccacctaaaaacgtaaactcgg 18954485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 8140927 - 8140992
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||||| |||||||| ||||||||||| |||| | ||||||| ||||||||||| ||| ||||    
T  8140927 agaaatcgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcgataatctcg 8140992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32760141 - 32760198
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactc 58  Q
    ||||||| |||||||||||| ||||||||||| |||| | ||||||| ||||||||||    
T  32760141 ctagaaaccgagtttacctcagagttaacacgattttggtacctaaaaacgtaaactc 32760198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 34751622 - 34751674
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 61  Q
    |||||||||||||||||||||||||||||  ||  |||| |||||||||||||    
T  34751622 cgagtttacctccgagttaacacgtttttgccatttaaaaacgtaaactcggt 34751674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 3583598 - 3583665
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||| ||||||||| ||  |||||||||| |||  | ||||||| ||||||||||||||||||||    
T  3583598 ctagaaaccgagtttacttctaagttaacacgatttcggtacctaaaaacgtaaactcggtaaactcg 3583665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 15834730 - 15834793
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||| |||||||| ||||||||||| |||| | ||||||| | ||||||||||||| ||||    
T  15834730 aaatcgaatttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcg 15834793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 33886910 - 33886953
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgt 52  Q
    |||||||||||||||||||||||||||||  |||||||| ||||    
T  33886910 cgagtttacctccgagttaacacgtttttgccacctaaaaacgt 33886953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 33957340 - 33957297
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgt 52  Q
    |||||||||||||||||||||||||||||  |||||||| ||||    
T  33957340 cgagtttacctccgagttaacacgtttttgccacctaaaaacgt 33957297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 34019194 - 34019139
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    ||||||| ||||||||||||||||||| |||||  ||||| || ||||||||||||    
T  34019194 aaatcgaatttacctccgagttaacacatttttgccaccttaaaacgtaaactcgg 34019139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 49231511 - 49231453
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 61  Q
    ||||| |||||||||||| ||||||||||| |||| | ||||||| || ||||||||||    
T  49231511 agaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacataaactcggt 49231453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 25830953 - 25831038
Alignment:
Q  13 tttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    |||| ||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||  ||||| ||||  ||||| || |||||||    
T  25830953 tttatctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgtggaacattg 25831038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 45273071 - 45273006
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||| ||||||||||  |||| | ||||||| ||||||||||| ||| ||||    
T  45273071 agaaaccgagtttacctcagagttaacacaatttttgtacctaaaaacgtaaactcgataatctcg 45273006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8084267 - 8084170
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || |||||||    
T  8084267 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgcggtttgtggaacattg 8084170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 29469219 - 29469122
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||    
T  29469219 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgaattgacacgcgatttgtgaaacattgct 29469122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 33138856 - 33138799
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||    
T  33138856 agaaatcgagtttacctccgagttaacacgattttggtacctaaacacgtaaactcgg 33138799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 23671421 - 23671485
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    |||||||||||||||||||||||||||||| |||| | |||||||||||||||  ||||||||||    
T  23671421 agaaatcgagtttacctccgagttaacacgattttggtacctaaacacgtaaaaccggtaaactc 23671485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 6487367 - 6487422
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  6487367 aaatcgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgg 6487422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 42937458 - 42937513
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactc 58  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  42937458 agaaatcgagtttacctccgagttaaaacgcttttagcacctaaatacgtaaactc 42937513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 871865 - 871789
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacac 80  Q
    |||||||||||||||||||||||| ||||| |||  | ||||||| |||||||||||||||||||| |||||| ||||    
T  871865 agaaatcgagtttacctccgagttgacacgatttg-gtacctaaaaacgtaaactcggtaaactcgacgagttaacac 871789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 56424028 - 56424079
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  56424028 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcgg 56424079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 51967327 - 51967277
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||||||||||||||||||||  |||||||| |||||||||||    
T  51967327 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactcg 51967277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 29856021 - 29855956
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||||||||||||| ||||||||||| |||| | || |||| ||||||||||||||| ||||    
T  29856021 agaaatcgagtttacctcagagttaacacgatttttgtacataaaaacgtaaactcggtaatctcg 29855956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 40487712 - 40487761
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactc 58  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  40487712 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactc 40487761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 49501229 - 49501294
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  49501229 agaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 49501294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 49507294 - 49507359
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  49507294 agaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 49507359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 50517249 - 50517192
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    ||||||||||||||||||  |||||||||| |||| | ||||||||||||||||||||    
T  50517249 agaaatcgagtttacctcaaagttaacacgattttggtacctaaacacgtaaactcgg 50517192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 41725618 - 41725558
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    |||||||||||||||||| ||||||||||| |||| | ||||||| ||||||||| |||||    
T  41725618 agaaatcgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactaggtaa 41725558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 3860237 - 3860287
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||||||||||||||||||||  ||| |||| |||||||||||    
T  3860237 cgagtttacctccgagttaacacgtttttgccacataaaaacgtaaactcg 3860287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 3868994 - 3869044
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||||||||||||||||||||  ||| |||| |||||||||||    
T  3868994 cgagtttacctccgagttaacacgtttttgccacataaaaacgtaaactcg 3869044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 29510113 - 29510178
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||| |||||||| || ||||||||||| ||||   ||||||||||||||||||| ||||||||    
T  29510113 agaaattgagtttacatcagagttaacacgattttgatacctaaacacgtaaactcgataaactcg 29510178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 32322571 - 32322506
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||| || |||||||| |||| | ||||||| ||||||||||||||| ||||    
T  32322571 agaaaccgagtttacctcagaattaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 32322506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 32889952 - 32889891
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaa 64  Q
    |||||| |||||||| ||  |||||||||| |||| | ||||||||||||||||||||||||    
T  32889952 agaaattgagtttacatcaaagttaacacgattttggtacctaaacacgtaaactcggtaaa 32889891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 41470379 - 41470424
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaa 54  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||    
T  41470379 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaa 41470424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 49834530 - 49834590
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaa 63  Q
    ||||| |||||||||||| ||||||||||| |||| | | ||||| |||||||||||||||    
T  49834530 agaaaccgagtttacctcagagttaacacgatttttgtagctaaaaacgtaaactcggtaa 49834590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 23987692 - 23987637
Alignment:
Q  13 tttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  23987692 tttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 23987637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 24966576 - 24966623
Alignment:
Q  13 tttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    ||||| |||||||||||||| |||| | ||||||||||||||||||||    
T  24966576 tttacttccgagttaacacgattttggtacctaaacacgtaaactcgg 24966623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 46286767 - 46286708
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||||  | ||||||||| |||| | ||||||| ||||||||||||    
T  46286767 ctagaaatcgagtttaccttagtgttaacacgattttggtacctaaaaacgtaaactcgg 46286708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 8563411 - 8563461
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||| ||||||||||||||||||||  || ||||| |||||||||||    
T  8563411 cgagtttatctccgagttaacacgtttttgtcatctaaaaacgtaaactcg 8563461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 9972823 - 9972773
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||||||||| ||||||||||  |||||||| || ||||||||    
T  9972823 cgagtttacctccgagtttacacgtttttgccacctaaaaacataaactcg 9972773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 25013500 - 25013446
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||| ||||||| ||||||||||||| ||||||  |||||||| |||||||||||    
T  25013500 aaattgagtttagctccgagttaacatgtttttgccacctaaaaacgtaaactcg 25013446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 55165579 - 55165509
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagtt 75  Q
    ||||| ||||||||||| |||||| ||| |||| | || |||| |||||||||| ||||||||| ||||||    
T  55165579 aaatcaagtttacctccaagttaatacgattttggtacgtaaaaacgtaaactcagtaaactcgacgagtt 55165509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 28484401 - 28484340
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacg-tttttagcacctaaacacgtaaactcggtaa 63  Q
    ||||| |||||||||||| |||||||||||  |||| | ||||||| |||||||||||||||    
T  28484401 agaaaccgagtttacctcagagttaacacgactttttgtacctaaaaacgtaaactcggtaa 28484340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 46862962 - 46863019
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    ||||||||| ||||| ||  |||||||||  |||||| ||||||||||||||||||||    
T  46862962 agaaatcgaatttacttcatagttaacacaattttagtacctaaacacgtaaactcgg 46863019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 19484271 - 19484176
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||||||    
T  19484271 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacataaactcggtaaactcgccgagttgacacgcgatttgtggaacattg 19484176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 8029885 - 8029983
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgcta 101  Q
    |||||||||||||| ||| ||||||||||| |||| | ||||||||||||||||||| ||||||||  ||||| ||||  |||||  | ||||||||||    
T  8029885 agaaatcgagtttatctcagagttaacacgattttggtacctaaacacgtaaactcgataaactcgaagagttaacactcgatttacggaacattgcta 8029983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32498048 - 32497981
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||| |||||||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  32498048 ctagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 32497981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 26856610 - 26856515
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||| |||||||||||| ||||||||||| |||| | ||||| | || |||||||||||| ||||  ||||| ||||  ||||| ||||||||||    
T  26856610 agaaaccgagtttacctcagagttaacacgatttttgtacctataaacataaactcggtaatctcggagagttaacactcgatttgtgtaacattg 26856515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 1527951 - 1528001
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaa 55  Q
    |||||||||||||||||||||||||||||||||  ||| |||| |||||||    
T  1527951 aaatcgagtttacctccgagttaacacgtttttgccacttaaaaacgtaaa 1528001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 41252218 - 41252164
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    ||||||||||||| |||||||||||||||||||  |||||||| | |||||||||    
T  41252218 aaatcgagtttacttccgagttaacacgtttttgccacctaaaaaagtaaactcg 41252164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 6388177 - 6388242
Alignment:
Q  10 gagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagtt 75  Q
    ||||||||||||||||||||||| |||| | ||||||| || |||| ||| |||||||| ||||||    
T  6388177 gagtttacctccgagttaacacgattttggtacctaaaaacataaattcgataaactcggcgagtt 6388242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 9288190 - 9288255
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  9288190 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 9288255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 10295035 - 10295100
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||| ||||||||||| || | | ||||||| ||||||||||||||| ||||    
T  10295035 agaaaccgagtttacctcagagttaacacgattgttgtacctaaaaacgtaaactcggtaatctcg 10295100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 18305672 - 18305767
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| |||||| |||||||| ||||  ||||| ||||  |||||  |||||||||    
T  18305672 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaagctcggtaatctcggagagttaacactcgatttgcgtaacattg 18305767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 43166382 - 43166437
Alignment:
Q  13 tttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    |||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  43166382 tttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 43166437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 19717570 - 19717635
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| | ||||||||||||| ||||    
T  19717570 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcg 19717635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 24067162 - 24067105
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||| ||||| ||||||||||| ||||| |||| | ||||||| ||||||||||||    
T  24067162 agaaattgagttcacctccgagttgacacgattttggtacctaaaaacgtaaactcgg 24067105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 31625813 - 31625748
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||||||||| ||||||||||  |||| | ||||||| | ||||||||||||| ||||    
T  31625813 agaaaccgagtttacctcagagttaacacaatttttgtacctaaaaatgtaaactcggtaatctcg 31625748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 17234770 - 17234706
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    |||||||||||||||||||||||| | | | |||| | ||||||| ||| ||||| |||||||||    
T  17234770 agaaatcgagtttacctccgagttgataggattttggtacctaaaaacgcaaacttggtaaactc 17234706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 37131331 - 37131387
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||| ||||||||||||||||||| ||||| |||| | ||||||| | |||||||||    
T  37131331 agaagtcgagtttacctccgagttgacacgattttggtacctaaaaatgtaaactcg 37131387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 949 - 1013
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactc 67  Q
    ||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||    
T  949 agaaaccgagtttacctccgagttaacacgattttggtacctaaacacgtaaactcggtaaactc 1013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 486 - 541
Alignment:
Q  45 aaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattgct 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| || |||||||||    
T  486 aaacacgtaaactcggtaaactcgccgagttgacacgcgatttgtggaacattgct 541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 57759 - 57826
Alignment:
Q  1 ctagaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||| |||||||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  57759 ctagaaaccgagtttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcg 57826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 8912 - 8855
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcgg 60  Q
    |||||||||||||||||| ||||||||||| |||| | ||||||||| ||||||||||    
T  8912 agaaatcgagtttacctcagagttaacacgattttggtacctaaacatgtaaactcgg 8855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 25651 - 25700
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactc 58  Q
    |||||||||||||||||||||||||||||  |||||||| ||||||||||    
T  25651 cgagtttacctccgagttaacacgtttttgccacctaaaaacgtaaactc 25700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 1417 - 1365
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggt 61  Q
    ||||||||||||| |||||||| ||||||  |||||||| |||||||||||||    
T  1417 cgagtttacctccaagttaacatgtttttgccacctaaaaacgtaaactcggt 1365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1504 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 1371 - 1276
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacacgagatttttgtaacattg 98  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||||||| ||||||||||||||| ||||  ||||| ||||  ||||| || |||||||    
T  1371 agaaaccgattttacctcagagttaacacgatttttgtacctaaaaacgtaaactcggtaatctcggagagttaacactcgatttgtggaacattg 1276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 440 - 390
Alignment:
Q  9 cgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcg 59  Q
    |||||||||||||||||||||||||||||  ||| |||| |||||||||||    
T  440 cgagtttacctccgagttaacacgtttttgccacataaaaacgtaaactcg 390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 11027 - 10964
Alignment:
Q  5 aaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||||| |||||||| ||||||||||| |||| | ||||||| | ||||||||||||| ||||    
T  11027 aaatcgaatttacctcagagttaacacgatttttgtacctaaaaatgtaaactcggtaatctcg 10964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 39332 - 39397
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcg 68  Q
    ||||| |||||| ||||| | ||||||||| |||| | ||||||| ||||||||||||||| ||||    
T  39332 agaaaccgagttgacctcagggttaacacgattttggtacctaaaaacgtaaactcggtaatctcg 39397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 80
Target Start/End: Complemental strand, 89336 - 89259
Alignment:
Q  3 agaaatcgagtttacctccgagttaacacgtttttagcacctaaacacgtaaactcggtaaactcgccgagttgacac 80  Q
    ||||||||||||||||| | |||||||||| | || | ||||||| || |||||||| ||||||| | ||||| ||||    
T  89336 agaaatcgagtttaccttcaagttaacacgatattggtacctaaaaacttaaactcgataaactcacagagttaacac 89259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University