View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_33 (Length: 255)
Name: NF15567_low_33
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 45075036 - 45074800
Alignment:
| Q |
1 |
gttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttggatgacag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45075036 |
gttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttggatgacag |
45074937 |
T |
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| Q |
101 |
ggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgccaagaatgtgactat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45074936 |
ggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaagaatgtgactat |
45074837 |
T |
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| Q |
201 |
tgcaggcaaacttgatggaatttctaatgaccctttt |
237 |
Q |
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| T |
45074836 |
tgcaggcaaacttgatggaatttctaatgaccctttt |
45074800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 45067476 - 45067241
Alignment:
| Q |
1 |
gttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttggatgacag |
100 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45067476 |
gttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttggatgacag |
45067377 |
T |
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| Q |
101 |
ggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgccaagaatgtgactat |
200 |
Q |
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| T |
45067376 |
gggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgctaagaatgtgacaat |
45067277 |
T |
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| Q |
201 |
tgcaggcaaacttgatggaatttctaatgacccttt |
236 |
Q |
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| T |
45067276 |
tgcaggacaacttgacggaatttctaatgacccttt |
45067241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 237
Target Start/End: Complemental strand, 45078247 - 45078030
Alignment:
| Q |
20 |
tcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttggatgacagggtcttataagtcacaccc |
119 |
Q |
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|||||||||| || | ||||||||||||||| |||||||||||| ||||| | |||||||||||||| |||||||||||||| |||||| || || |
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| T |
45078247 |
tcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtgttttggatgacaggttcttatggagatcatcc |
45078148 |
T |
|
| Q |
120 |
tgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgccaagaatgtgactattgcaggcaaacttgatgga |
219 |
Q |
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| T |
45078147 |
tgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactattgcgggcaaacttgaagga |
45078048 |
T |
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| Q |
220 |
atttctaatgaccctttt |
237 |
Q |
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|||||||| ||||||||| |
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| T |
45078047 |
atttctaacgaccctttt |
45078030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 45082562 - 45082326
Alignment:
| Q |
1 |
gttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttggatgacag |
100 |
Q |
| |
|
||||| |||||| | ||| |||||||||| || | |||||||||||||||||||||||||||| ||||| | ||| |||||||||| ||||||||||||| |
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| T |
45082562 |
gttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgttttggatgacag |
45082463 |
T |
|
| Q |
101 |
ggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgccaagaatgtgactat |
200 |
Q |
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| T |
45082462 |
gttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaagaatgtgactat |
45082363 |
T |
|
| Q |
201 |
tgcaggcaaacttgatggaatttctaatgaccctttt |
237 |
Q |
| |
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||| |||||| |||| ||||||||||| ||||||||| |
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| T |
45082362 |
tgcgggcaaagttgaaggaatttctaacgaccctttt |
45082326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 34504811 - 34504572
Alignment:
| Q |
1 |
gttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaat---gaaatatgttttttggatga |
97 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| |||| ||| ||||||| || |||||| |||||| ||| |
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| T |
34504811 |
gttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatgtgttttggttga |
34504712 |
T |
|
| Q |
98 |
cagggtcttata-agtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgttactgccaagaatgtga |
196 |
Q |
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||||||||||| || | |||||||||||||||||||||||||| |||||||||||||||| |||||| | || ||||||||||| ||| |||||||||| |
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| T |
34504711 |
cagggtcttatggagac-caccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattgctaagaatgtga |
34504613 |
T |
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| Q |
197 |
ctattgcaggcaaacttgatggaatttctaatgaccctttt |
237 |
Q |
| |
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| |||| || ||||||| |||||||||||||| |||||| |
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| T |
34504612 |
ccgttgcggggcaacttgaaggaatttctaatgatcctttt |
34504572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 17584513 - 17584414
Alignment:
| Q |
2 |
ttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttttttggatgacagg |
101 |
Q |
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||||||||||||| || | |||||||| ||||||||||| | || ||||| | ||||||||| ||| | |||||||||||||| |||||||||||||| |
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| T |
17584513 |
ttagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttggatgacagg |
17584414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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