View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_34 (Length: 254)
Name: NF15567_low_34
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 2840637 - 2840844
Alignment:
| Q |
8 |
aagcaaaggcactgtttgatgaacaagatgaagagaaactgcaggtatatcatgacatctactctttagttagcagacaaagtgaaaatctcggagttgt |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2840637 |
aagccaaggcactgtttgatgaacaagatgaagagaaactgcaggtatatcatgacatctactctttagttagcagacaaagtgaaaatctcggagttgt |
2840736 |
T |
|
| Q |
108 |
tcggtttaaggnnnnnnnttctgtttgtttca-nnnnnnnnnctcccacctataaatacaaaaataagataacatttttgtgattccaagtaagaacaga |
206 |
Q |
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||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2840737 |
tcggtttaaggaaaaaaattctgtttgtttcattttttttttctcccatctataaatacaaaaataagataacatttttgtgattccaagtaagaacaga |
2840836 |
T |
|
| Q |
207 |
aaatatat |
214 |
Q |
| |
|
||||||| |
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| T |
2840837 |
gaatatat |
2840844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 2845324 - 2845531
Alignment:
| Q |
8 |
aagcaaaggcactgtttgatgaacaagatgaagagaaactgcaggtatatcatgacatctactctttagttagcagacaaagtgaaaatctcggagttgt |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845324 |
aagccaaggcactgtttgatgaacaagatgaagagaaactgcaggtatatcatgacatctactctttagttagcagacaaagtgaaaatctcggagttgt |
2845423 |
T |
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| Q |
108 |
tcggtttaaggnnnnnnnttctgtttgtttca-nnnnnnnnnctcccacctataaatacaaaaataagataacatttttgtgattccaagtaagaacaga |
206 |
Q |
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||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2845424 |
tcggtttaaggaaaaaaattctgtttgtttcattttttttttctcccatctataaatacaaaaataagataacatttttgtgattccaagtaagaacaga |
2845523 |
T |
|
| Q |
207 |
aaatatat |
214 |
Q |
| |
|
||||||| |
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|
| T |
2845524 |
gaatatat |
2845531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 2832750 - 2832642
Alignment:
| Q |
8 |
aagcaaaggcactgtttgatgaacaagatgaagagaaactgcaggtatatcatgacatctactctttagttagcagacaaagtg-aaaatctcggagttg |
106 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||| ||| ||| |
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| T |
2832750 |
aagccaaggcactgtttggtgaacaagatgaagaaaaactgcaggtatatcacgacatctacactttagttagcagacaaagtgaaaaatctaggacttg |
2832651 |
T |
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| Q |
107 |
ttcggttta |
115 |
Q |
| |
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|||||||| |
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|
| T |
2832650 |
atcggttta |
2832642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 2832607 - 2832556
Alignment:
| Q |
153 |
cacctataaatacaaaaataagataacatttttgtgattccaagtaagaaca |
204 |
Q |
| |
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||||||||||||||||||| |||| ||| ||||||||||||||||| ||||| |
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| T |
2832607 |
cacctataaatacaaaaatcagatgacagttttgtgattccaagtatgaaca |
2832556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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