View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15567_low_35 (Length: 252)

Name: NF15567_low_35
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15567_low_35
NF15567_low_35
[»] chr6 (3 HSPs)
chr6 (190-235)||(25004739-25004784)
chr6 (181-222)||(194309-194350)
chr6 (122-172)||(25004636-25004686)
[»] chr3 (5 HSPs)
chr3 (190-235)||(16474873-16474918)
chr3 (36-79)||(5005567-5005610)
chr3 (190-232)||(5005369-5005411)
chr3 (122-172)||(16474770-16474820)
chr3 (130-172)||(5005464-5005506)
[»] chr7 (1 HSPs)
chr7 (189-222)||(31210700-31210733)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 25004739 - 25004784
Alignment:
Q  190 cactcaaatttagttcttctaatagatgatcattagatccctcctt 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  25004739 cactcaaatttagttcttctaatagatgatcattatatccctcctt 25004784  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 194309 - 194350
Alignment:
Q  181 atcctcatccactcaaatttagttcttctaatagatgatcat 222  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  194309 atcctcgtccactcaaatttagttcttctaatagatgatcat 194350  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 25004636 - 25004686
Alignment:
Q  122 aaatatgagccactcttctttgattctgagtattttacctttcacgtaaac 172  Q
    ||||| |||||||||||||||||||  ||| ||||||||||||||||||||    
T  25004636 aaatacgagccactcttctttgatttggagcattttacctttcacgtaaac 25004686  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 16474873 - 16474918
Alignment:
Q  190 cactcaaatttagttcttctaatagatgatcattagatccctcctt 235  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  16474873 cactcaaatttagttcttctaatagatgatcattatatccctcctt 16474918  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 5005610 - 5005567
Alignment:
Q  36 taggtaacaaacccatgatctcatagctattctagcacacgtta 79  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  5005610 taggtaacaaacccatgatcacatagctattctagcacacgtta 5005567  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 5005411 - 5005369
Alignment:
Q  190 cactcaaatttagttcttctaatagatgatcattagatccctc 232  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  5005411 cactcaaatttagttcttctaatagatgatcattatatccctc 5005369  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 16474770 - 16474820
Alignment:
Q  122 aaatatgagccactcttctttgattctgagtattttacctttcacgtaaac 172  Q
    ||||| |||||||||||||||||||  ||| ||||||||||||||||||||    
T  16474770 aaatacgagccactcttctttgatttggagcattttacctttcacgtaaac 16474820  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 5005506 - 5005464
Alignment:
Q  130 gccactcttctttgattctgagtattttacctttcacgtaaac 172  Q
    |||||||||||||||||  ||| ||||||||||||||||||||    
T  5005506 gccactcttctttgatttggagcattttacctttcacgtaaac 5005464  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 31210700 - 31210733
Alignment:
Q  189 ccactcaaatttagttcttctaatagatgatcat 222  Q
    ||||||||||||||||||||||||||||||||||    
T  31210700 ccactcaaatttagttcttctaatagatgatcat 31210733  T

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