View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_39 (Length: 240)
Name: NF15567_low_39
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 21 - 221
Target Start/End: Original strand, 1963040 - 1963240
Alignment:
| Q |
21 |
cttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaat |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1963040 |
cttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttcttattaatagcttcctggaaattgaaaagggtcctatagaagcaat |
1963139 |
T |
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| Q |
121 |
gacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctg |
220 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1963140 |
gacagatgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctg |
1963239 |
T |
|
| Q |
221 |
a |
221 |
Q |
| |
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| |
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|
| T |
1963240 |
a |
1963240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 21 - 220
Target Start/End: Complemental strand, 2015389 - 2015190
Alignment:
| Q |
21 |
cttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaat |
120 |
Q |
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||||||| | ||| |||||| ||||||||||||| ||||||||||||||| |||| |||||||| ||| | ||||| ||||| ||||||||||||||| | |
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| T |
2015389 |
cttacaaatacttactccaaggtgttgaaaaattgcgtctttttgatggtattcttattaatagtttcatagaaatcgaaaacggtcctatagaagcact |
2015290 |
T |
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| Q |
121 |
gacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctg |
220 |
Q |
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| T |
2015289 |
gacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgaatgtctg |
2015190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 220
Target Start/End: Original strand, 2432951 - 2433128
Alignment:
| Q |
43 |
tgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaac |
142 |
Q |
| |
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|||| |||||| |||| || ||||||||||||| ||||||||||| | ||||| |||| |||||||||| ||||| ||||||| |||||||||||||| |
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| T |
2432951 |
tgttaaaaaataccgttttgttgatggtgttcttgttaatagcttcttagaaatggaaaggggtcctataaaagcactgacagatgaaggaagtgaaaat |
2433050 |
T |
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| Q |
143 |
cttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaataagtttgagtgtctg |
220 |
Q |
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| T |
2433051 |
cctcttgtgtatcctgttggacccatcatccagacaataacaagttctgacgatgatgctaatatgttggagtgtctg |
2433128 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 205
Target Start/End: Complemental strand, 2018772 - 2018588
Alignment:
| Q |
21 |
cttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaat |
120 |
Q |
| |
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||||||| ||||| || || ||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||||| | |
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| T |
2018772 |
cttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatggtattcttattaatagcttcctagaaattgaaaaaggtcctatagaagcact |
2018673 |
T |
|
| Q |
121 |
gacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatgctaat |
205 |
Q |
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||||| || |||||| |||| | ||| |||||||||||||| ||||||||||| | ||| | ||| |||||||||| |||| |
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| T |
2018672 |
cacagaagacagaagtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatgataat |
2018588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 2004952 - 2004843
Alignment:
| Q |
64 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
163 |
Q |
| |
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|||||||||||| ||||||||||||| ||||| || | |||||||||| ||||||| ||| |||||||||||||||| || ||||||| |||||||| |
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| T |
2004952 |
tgatggtgttcttgttaatagcttcctagaaatggagatgggtcctataagtgcaatgaaagatgaaggaagtgaaaaccctcctgtgtatcctgttgga |
2004853 |
T |
|
| Q |
164 |
cccattatcc |
173 |
Q |
| |
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||||| |||| |
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| T |
2004852 |
cccatcatcc |
2004843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 2008332 - 2008191
Alignment:
| Q |
64 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
163 |
Q |
| |
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|||||||||||| ||||||||||||| ||||| || | ||||||| || ||||||| ||| || ||| |||| |||| || |||||| |||||||| |
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| T |
2008332 |
tgatggtgttcttgttaatagcttcctagaaatagagatgggtcctctaagtgcaatgaaagaggagggaggtgacaaccctccagtgtatcctgttgga |
2008233 |
T |
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| Q |
164 |
cccattatccaaacactaacaacatctggtgatgatgctaat |
205 |
Q |
| |
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| T |
2008232 |
cctattatcgaaacagaaacaaaatctggtgatgatgctaat |
2008191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 1968683 - 1968824
Alignment:
| Q |
64 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
163 |
Q |
| |
|
|||||||||| | ||||||||||||||||| | || | ||| |||||| ||||||| ||| || |||||||| |||| || |||||| |||||||| |
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| T |
1968683 |
tgatggtgtttttgttaatagcttcctggaattggagatgggacctataagtgcaatgaaagaggagggaagtgacaaccctccagtgtatcctgttgga |
1968782 |
T |
|
| Q |
164 |
cccattatccaaacactaacaacatctggtgatgatgctaat |
205 |
Q |
| |
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|| |||||||||||| ||||| || ||||||||||||||| |
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| T |
1968783 |
ccaattatccaaacagaaacaagttcaggtgatgatgctaat |
1968824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 205
Target Start/End: Complemental strand, 2011947 - 2011806
Alignment:
| Q |
64 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
163 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| |||| ||| |||||| | ||| ||||||| |||||||||| |||| | ||| ||| |||||||| |
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| T |
2011947 |
tgatggtgttcttgttaatagcttcttagaaatggaaatgggacctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttgga |
2011848 |
T |
|
| Q |
164 |
cccattatccaaacactaacaacatctggtgatgatgctaat |
205 |
Q |
| |
|
||||| ||||| ||| ||||| |||| ||||||||||||| |
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| T |
2011847 |
cccatcatccagacagtaacaggttctgttgatgatgctaat |
2011806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 1964747 - 1964851
Alignment:
| Q |
64 |
tgatggtgttctaattaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttgga |
163 |
Q |
| |
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|||||||||||| ||||||||||| | ||||| |||| ||| |||||| ||||| |||||| |||||||||| |||| | ||||||| |||||||| |
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| T |
1964747 |
tgatggtgttcttgttaatagcttcttagaaatggaaatgggacctataaaagcaccgacagaggaaggaagtggcaacccttctgtgtatcctgttgga |
1964846 |
T |
|
| Q |
164 |
cccat |
168 |
Q |
| |
|
||||| |
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|
| T |
1964847 |
cccat |
1964851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 5902275 - 5902376
Alignment:
| Q |
77 |
attaatagcttcctggaaattgaaaagggtcctatagaagcaatgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaa |
176 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||| |||| | |||||| || |||||||||||||||||| |
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| T |
5902275 |
attaatagcttcctggaaattgaaaaaggtcctatagaagcactgacagaagaaggaagtggtaaccctgctgtgtaccctattggacccattatccaaa |
5902374 |
T |
|
| Q |
177 |
ca |
178 |
Q |
| |
|
|| |
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|
| T |
5902375 |
ca |
5902376 |
T |
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