View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_43 (Length: 216)
Name: NF15567_low_43
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 216
Target Start/End: Original strand, 32179100 - 32179201
Alignment:
| Q |
115 |
cattcagtagcttttcaatttcaaaagtaaacttttta----ttctttattcatgtaataatagtttaatggctgtacaaacaatattgtcggcgtaaaa |
210 |
Q |
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| T |
32179100 |
cattcagtagcttttcaatttcaaaagtaaactttttacttattctttattcatgtaataatagtttaatggctgt----acaatattgtcggtgtaaaa |
32179195 |
T |
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| Q |
211 |
tagtat |
216 |
Q |
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|||||| |
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| T |
32179196 |
tagtat |
32179201 |
T |
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