View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_5 (Length: 526)
Name: NF15567_low_5
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 37972723 - 37973227
Alignment:
| Q |
1 |
agatataattcattgagtattgtatttt-ttgtgctaacataattcatccagtattttgtaagcatttgacatttttaagaatattatttccaaaaatta |
99 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37972723 |
agatataattcattgagtattgtatttttttgtgctaacataattcatcgagtatttggtaagcatttgacatttttaagaatattatttccaaaaatta |
37972822 |
T |
|
| Q |
100 |
gtactctttttatagcatcctcctttggagcttggcaagcactacgatttgtaacacttttgaattaaatatgtttgagtaagaacgg-gaccccgtaaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | |||| || |
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| T |
37972823 |
gtactctttttatagcatcctcctttggagcttggcaagcactacgatttgtaacacttttgaattaaatatgtttcagcaagaacggagctcccgcaag |
37972922 |
T |
|
| Q |
199 |
tgggcggtgagatgggttccctcgaattagttgatctttaaatcggatatcaaatttnnnnnnnnnnnnnnnncgtttgagcactggtgagtgattatat |
298 |
Q |
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| T |
37972923 |
tgggcagtgagattgatcccctcgaattaatcgacccttagatcgaataccgagttt--tcaaaaaaaaaaaacgtttgagcaatggtgagtgatcatat |
37973020 |
T |
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| Q |
299 |
aca----atgattgacaactaagcagtcatacactttgcaagtaa-----tctaatgatgatattgatgctgatgcatagaattaaggagtaaatatttg |
389 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37973021 |
acaaccgatgattgacaactaagcagtcatacactttgcaagtaatctagtctagtgatgatattgatgctgatgcatggaattaaggagtaaatatttg |
37973120 |
T |
|
| Q |
390 |
agacaatatttcatttcttaaaagggtcaagtgaacaaaggattctt-aaagtaaaaagcaagttagagaagcaacttgtttgccaaccaaatcatcata |
488 |
Q |
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| T |
37973121 |
agacaatatttcatttcttaaaatagtcaagtgaacaaaggattcttaaaattaaaaagcaagttagagaagcaacttgtttgccaaccaaatcatcata |
37973220 |
T |
|
| Q |
489 |
tcatatc |
495 |
Q |
| |
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||||||| |
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|
| T |
37973221 |
tcatatc |
37973227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 484
Target Start/End: Original strand, 37952353 - 37952483
Alignment:
| Q |
354 |
tgatgctgatgcatagaattaaggagtaaatatttgagacaatatttcatttcttaaaagggtcaagtgaacaaaggattcttaaagtaaaaagcaagtt |
453 |
Q |
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||||||||||||| | |||||| ||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
37952353 |
tgatgctgatgcacaaaattaaagagtaaaaatttgagacaatgtttcattttttagaagggtcaagtgaacaaaggattcttgaagtagaaagcaagtg |
37952452 |
T |
|
| Q |
454 |
agagaagcaacttgtttgccaaccaaatcat |
484 |
Q |
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| T |
37952453 |
agggaagcaacttgcataccaaccaaatcat |
37952483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 417 - 484
Target Start/End: Original strand, 37951801 - 37951868
Alignment:
| Q |
417 |
caagtgaacaaaggattcttaaagtaaaaagcaagttagagaagcaacttgtttgccaaccaaatcat |
484 |
Q |
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| T |
37951801 |
caagtgaacaaaggattcttaaagttgacagcaagtcagagaagcaacttgcttaccaaccaaatcat |
37951868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 108 - 178
Target Start/End: Original strand, 37952215 - 37952283
Alignment:
| Q |
108 |
tttatagcatcctcctttggagcttggcaagcactacgatttgtaacacttttgaattaaatatgtttgag |
178 |
Q |
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| T |
37952215 |
tttatagcatcctcctttggagttt--caaacactacgatttataacacttttgaattaaatacgtttgag |
37952283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 37952128 - 37952209
Alignment:
| Q |
1 |
agatataattcattgagtattgtattttttgtgctaacataattcatccagtattttgtaagcatttgacatttttaagaata |
83 |
Q |
| |
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||||||||||||||| || || | | |||| | |||| |||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
37952128 |
agatataattcattgtgttttttttctttttttctaatataattcaatgagtattt-gtaagcatttgacatttttaagaata |
37952209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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