View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_6 (Length: 507)
Name: NF15567_low_6
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 22698166 - 22698638
Alignment:
| Q |
15 |
caagaagcctacaataagaactatgcacttttgagcatacatgagaaattaaatttaccaaaacaaaatataaaaagcactgcaagcagaccaaatcttg |
114 |
Q |
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| T |
22698166 |
caagaagcctacaataagaactatgcacttttgagcatacatgagaaattaaatttagcaaaacaaaatataaaaagcactgcaagaagatcaaatctta |
22698265 |
T |
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| Q |
115 |
aacttacaaatagttccatgtataaaacgatctgcaattggacaaaacatagttgttagatttcactttatattcaaaagtgcacacaaacagacaagca |
214 |
Q |
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| T |
22698266 |
aacttacaaatagttccatgtataaaacgatctgcaattggacaaatcatagttattagatttcactttatattcaaaagtgcacacaaacagacataca |
22698365 |
T |
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| Q |
215 |
----caagttgttttaaattgcagtcaaatgtcgccaatgcgatctcaac--cagtcatgaagacgacaaaaaccttgatgtcgtagtcaagatcgtggt |
308 |
Q |
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| T |
22698366 |
caagcaagttgttttaaattgcagtcaaatgtcgccaatgcgttctcaaccacagtcatgaagacgacaaaaaccttgatgtcgtagtcaagatcgtggt |
22698465 |
T |
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| Q |
309 |
tgtatagctttttcgaaactcgatcctaattaataatattatatttgtaatcagggttttaaacaaaggttgacgatagcgatctaagctgcagagtaac |
408 |
Q |
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| T |
22698466 |
tgtatagctttttcaaaactcgatcc----taataatattatatttgtaatcagggttttaaacaaaggttggcgatagcgatctaagccgcagagtaac |
22698561 |
T |
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| Q |
409 |
agttttttatgttaccaaaaccttaacatgacagcttttgaggccatatcggccgtatttgatcgctattatttaca |
485 |
Q |
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| T |
22698562 |
agttttttatgttaccaaaaccttaacatgacagcttttgaagccatatcagccgtatttcatcgctattctttaca |
22698638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 22686377 - 22686558
Alignment:
| Q |
27 |
aataagaactatgcacttttgagcatacatgagaaattaaatttaccaaaacaaaatataaaaagcactgcaagcagaccaaatcttgaacttacaaata |
126 |
Q |
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||||||||| |||||| |||||||| |||| || |||||||||| ||| || ||| ||| | | ||||| |||| ||| ||||||||||||||||| |
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| T |
22686377 |
aataagaacaatgcacctttgagcacacatttgagattaaatttagcaatctaacatagaaaga--attgcaaacagatcaagtcttgaacttacaaata |
22686474 |
T |
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| Q |
127 |
gttccatgtataaaacgatctgcaa-ttggacaaaacatagttgttagatttcactttatattcaaaagtgcacacaaacagac |
209 |
Q |
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| T |
22686475 |
gttccaaggataaaatgatctgcagcttgcacaaaacatagttgttagatttcactttatattcacaacttcacacacacagac |
22686558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 298
Target Start/End: Original strand, 22687803 - 22687839
Alignment:
| Q |
262 |
agtcatgaagacgacaaaaaccttgatgtcgtagtca |
298 |
Q |
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| T |
22687803 |
agtcgtgaagacaacaaaaaccttgatgtcgtagtca |
22687839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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