View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15567_low_8 (Length: 503)
Name: NF15567_low_8
Description: NF15567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15567_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 32179664 - 32179178
Alignment:
| Q |
19 |
gttttttcattattataaatgcataatagaaaataatgacattagagagatgcaaatgacattaggtagagtttaaagtaattgaaattaccttgaaaat |
118 |
Q |
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| T |
32179664 |
gttttttcattattataaatgcataatagaaaataataacattagagaggtgcaaatgacattaggtagagtttaaagtaattg-aattaccttgaaagt |
32179566 |
T |
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| Q |
119 |
ttaaagtaataatannnnnnnnnnnnnnnnnnnnnnnnnacaaatataacgattattatggaactctttaaaaaacgaacattatgaaacaaattga--- |
215 |
Q |
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| T |
32179565 |
ttaaagtaataatattttttagataattttttatcttttacaaatataacgataattatggaactctttaaaaaacgatcattatgaaacaaatagatac |
32179466 |
T |
|
| Q |
216 |
taaataattaaccgatacgtaannnnnnnngtgctaacactctaattcattgaggagatagttctagtaatccggaactcagatgtaagtaaatctgatc |
315 |
Q |
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| T |
32179465 |
taaataattaaccgatatgtaattttttttgtgctaacactctaattcattgagaagatagttctagtaatccggaggtcagaggtaagtaaatctgatc |
32179366 |
T |
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| Q |
316 |
aagaattctttcatacataatcgaatttaaattccctcagacaattcannnnnnnatgaagctcgtta----------tgtaatcaagttgaaaatattt |
405 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||| ||| || |||||| |
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| T |
32179365 |
aagaattctttcacacataatcgaa-ttaaattccctcagacaatttatttttttatgaagctcgttaatcacttaactgtaatcatgttaaagatattt |
32179267 |
T |
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| Q |
406 |
aatgtacc---cttacatcaagaatccaatatcttgctacaacnnnnnnnngggtggagataactatactattttacgccgacaatatt |
491 |
Q |
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|||| ||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
32179266 |
aatggacccttcttacatcaagaatccaataccttgctacaacttttttttgggcggagataactatactattttacaccgacaatatt |
32179178 |
T |
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